(5 nodes) Mixed, incl. DoxX family, and Serine aminopeptidase, S33 network (Rhodoferax koreense)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APW37410.1	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (217 aa)
	APW37411.1	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (627 aa)
	APW40592.1	DoxX family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (139 aa)
	APW37412.1	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (548 aa)
	APW37413.1	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (275 aa)

Your Current Organism:

Rhodoferax koreense

NCBI taxonomy Id: 1842727
Other names: JCM 31441, KCTC 52288, R. koreense, Rhodoferax sp. DCY110, strain DCY110

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APW37410.1	APW37411.1	RD110_09590	RD110_09595	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.943
APW37410.1	APW37412.1	RD110_09590	RD110_09605	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.844
APW37410.1	APW37413.1	RD110_09590	RD110_09615	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.806
APW37410.1	APW40592.1	RD110_09590	RD110_09600	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DoxX family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.926
APW37411.1	APW37410.1	RD110_09595	RD110_09590	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.943
APW37411.1	APW37412.1	RD110_09595	RD110_09605	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.909
APW37411.1	APW37413.1	RD110_09595	RD110_09615	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.793
APW37411.1	APW40592.1	RD110_09595	RD110_09600	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DoxX family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.948
APW37412.1	APW37410.1	RD110_09605	RD110_09590	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.844
APW37412.1	APW37411.1	RD110_09605	RD110_09595	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.909
APW37412.1	APW37413.1	RD110_09605	RD110_09615	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.598
APW37412.1	APW40592.1	RD110_09605	RD110_09600	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	DoxX family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.873
APW37413.1	APW37410.1	RD110_09615	RD110_09590	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.806
APW37413.1	APW37411.1	RD110_09615	RD110_09595	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.793
APW37413.1	APW37412.1	RD110_09615	RD110_09605	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.598
APW37413.1	APW40592.1	RD110_09615	RD110_09600	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DoxX family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.665
APW40592.1	APW37410.1	RD110_09600	RD110_09590	DoxX family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.926
APW40592.1	APW37411.1	RD110_09600	RD110_09595	DoxX family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.948
APW40592.1	APW37412.1	RD110_09600	RD110_09605	DoxX family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.873
APW40592.1	APW37413.1	RD110_09600	RD110_09615	DoxX family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.665