(19 nodes) Mixed, incl. Phenazine biosynthesis-like protein, and LysE type translocator network (Rhodoferax koreense)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APW35831.1	Amino acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (216 aa)
	APW35832.1	LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family. (301 aa)
	APW35912.1	Transcriptional regulator ArgP; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family. (302 aa)
	APW36046.1	PhzF family phenazine biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (275 aa)
	APW36048.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (60 aa)
	APW36602.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (241 aa)
	APW36603.1	Phenazine biosynthesis protein PhzF; Derived by automated computational analysis using gene prediction method: Protein Homology. (292 aa)
	APW36604.1	Phenazine biosynthesis protein PhzF; Derived by automated computational analysis using gene prediction method: Protein Homology. (319 aa)
	APW36605.1	2-aminoadipate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (400 aa)
	APW36606.1	Lysine transporter LysE; Derived by automated computational analysis using gene prediction method: Protein Homology. (203 aa)
	APW36607.1	EamA family transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (318 aa)
	APW36608.1	Lysine transporter LysE; Derived by automated computational analysis using gene prediction method: Protein Homology. (199 aa)
	APW36609.1	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (470 aa)
	APW40628.1	Aspartate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (396 aa)
	APW38019.1	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (313 aa)
	APW38781.1	CoA transferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CoA-transferase III family. (414 aa)
	APW40922.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0225 family. (141 aa)
	APW40003.1	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (409 aa)
	APW40068.1	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (320 aa)

Your Current Organism:

Rhodoferax koreense

NCBI taxonomy Id: 1842727
Other names: JCM 31441, KCTC 52288, R. koreense, Rhodoferax sp. DCY110, strain DCY110

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APW35831.1	APW35832.1	RD110_00210	RD110_00215	Amino acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.	0.914
APW35831.1	APW35912.1	RD110_00210	RD110_00710	Amino acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator ArgP; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.	0.813
APW35832.1	APW35831.1	RD110_00215	RD110_00210	LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.	Amino acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.914
APW35912.1	APW35831.1	RD110_00710	RD110_00210	Transcriptional regulator ArgP; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.	Amino acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.813
APW36046.1	APW36604.1	RD110_01520	RD110_04770	PhzF family phenazine biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phenazine biosynthesis protein PhzF; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.606
APW36602.1	APW36603.1	RD110_04760	RD110_04765	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phenazine biosynthesis protein PhzF; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.591
APW36602.1	APW36604.1	RD110_04760	RD110_04770	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phenazine biosynthesis protein PhzF; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.585
APW36602.1	APW36605.1	RD110_04760	RD110_04780	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-aminoadipate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.432
APW36602.1	APW36606.1	RD110_04760	RD110_04785	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lysine transporter LysE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.407
APW36602.1	APW36607.1	RD110_04760	RD110_04790	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	EamA family transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.486
APW36602.1	APW36608.1	RD110_04760	RD110_04795	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lysine transporter LysE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.424
APW36603.1	APW36602.1	RD110_04765	RD110_04760	Phenazine biosynthesis protein PhzF; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.591
APW36603.1	APW36604.1	RD110_04765	RD110_04770	Phenazine biosynthesis protein PhzF; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phenazine biosynthesis protein PhzF; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.767
APW36603.1	APW36605.1	RD110_04765	RD110_04780	Phenazine biosynthesis protein PhzF; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-aminoadipate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.635
APW36603.1	APW36606.1	RD110_04765	RD110_04785	Phenazine biosynthesis protein PhzF; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lysine transporter LysE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.483
APW36603.1	APW36607.1	RD110_04765	RD110_04790	Phenazine biosynthesis protein PhzF; Derived by automated computational analysis using gene prediction method: Protein Homology.	EamA family transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.564
APW36603.1	APW36608.1	RD110_04765	RD110_04795	Phenazine biosynthesis protein PhzF; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lysine transporter LysE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.563
APW36603.1	APW36609.1	RD110_04765	RD110_04800	Phenazine biosynthesis protein PhzF; Derived by automated computational analysis using gene prediction method: Protein Homology.	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.451
APW36604.1	APW36046.1	RD110_04770	RD110_01520	Phenazine biosynthesis protein PhzF; Derived by automated computational analysis using gene prediction method: Protein Homology.	PhzF family phenazine biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.606
APW36604.1	APW36602.1	RD110_04770	RD110_04760	Phenazine biosynthesis protein PhzF; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.585