(33 nodes) Mixed, incl. Sulfur metabolism, and NMT1/THI5 like network (Rhodoferax koreense)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APW36162.1	Nitrilotriacetate monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (462 aa)
	APW36163.1	Sulfonate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (287 aa)
	APW36164.1	Taurine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (269 aa)
	APW40417.1	Sulfonate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (275 aa)
	APW36165.1	Nitrate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (366 aa)
	APW36485.1	Sulfonate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (259 aa)
	APW36486.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (278 aa)
	APW36487.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (321 aa)
	APW36594.1	NADPH:quinone reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the zinc-containing alcohol dehydrogenase family. Quinone oxidoreductase subfamily. (341 aa)
	APW36596.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (162 aa)
	APW40473.1	Nitrate/sulfonate/bicarbonate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (256 aa)
	APW36598.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (273 aa)
	APW36599.1	Nitrate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (326 aa)
	APW36714.1	Nitrate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (336 aa)
	APW36715.1	Mannosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (269 aa)
	APW36716.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (291 aa)
	APW37367.1	Taurine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (278 aa)
	APW37368.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (269 aa)
	APW37369.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (252 aa)
	APW37370.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (105 aa)
	APW40586.1	Aliphatic sulfonate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (353 aa)
	APW37371.1	3-oxoacyl-ACP reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (240 aa)
	APW37590.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (333 aa)
	APW37591.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (265 aa)
	APW37592.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (276 aa)
	APW37731.1	Taurine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (274 aa)
	APW37742.1	Nitrate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (271 aa)
	APW37743.1	Nitrate ABC transporter, permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (316 aa)
	APW40632.1	Nitrate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (414 aa)
	APW37974.1	FMN reductase (NADPH); Derived by automated computational analysis using gene prediction method: Protein Homology. (194 aa)
	APW40684.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (285 aa)
	APW38111.1	Sulfonate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (270 aa)
	APW38112.1	Nitrate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (345 aa)

Your Current Organism:

Rhodoferax koreense

NCBI taxonomy Id: 1842727
Other names: JCM 31441, KCTC 52288, R. koreense, Rhodoferax sp. DCY110, strain DCY110

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APW36162.1	APW36163.1	RD110_02165	RD110_02170	Nitrilotriacetate monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sulfonate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.767
APW36162.1	APW36164.1	RD110_02165	RD110_02175	Nitrilotriacetate monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Taurine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.858
APW36162.1	APW36165.1	RD110_02165	RD110_02185	Nitrilotriacetate monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.832
APW36162.1	APW37731.1	RD110_02165	RD110_11410	Nitrilotriacetate monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Taurine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.428
APW36162.1	APW37974.1	RD110_02165	RD110_12865	Nitrilotriacetate monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	FMN reductase (NADPH); Derived by automated computational analysis using gene prediction method: Protein Homology.	0.807
APW36162.1	APW40417.1	RD110_02165	RD110_02180	Nitrilotriacetate monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sulfonate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.796
APW36162.1	APW40586.1	RD110_02165	RD110_09355	Nitrilotriacetate monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aliphatic sulfonate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.468
APW36163.1	APW36162.1	RD110_02170	RD110_02165	Sulfonate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrilotriacetate monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.767
APW36163.1	APW36164.1	RD110_02170	RD110_02175	Sulfonate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Taurine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
APW36163.1	APW36165.1	RD110_02170	RD110_02185	Sulfonate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.989
APW36163.1	APW36486.1	RD110_02170	RD110_04095	Sulfonate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.830
APW36163.1	APW36487.1	RD110_02170	RD110_04100	Sulfonate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.513
APW36163.1	APW36598.1	RD110_02170	RD110_04740	Sulfonate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.608
APW36163.1	APW36714.1	RD110_02170	RD110_05515	Sulfonate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.426
APW36163.1	APW36716.1	RD110_02170	RD110_05525	Sulfonate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.781
APW36163.1	APW37367.1	RD110_02170	RD110_09335	Sulfonate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Taurine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.838
APW36163.1	APW37368.1	RD110_02170	RD110_09340	Sulfonate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.837
APW36163.1	APW37590.1	RD110_02170	RD110_10660	Sulfonate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.456
APW36163.1	APW37591.1	RD110_02170	RD110_10665	Sulfonate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.771
APW36163.1	APW37731.1	RD110_02170	RD110_11410	Sulfonate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Taurine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.982