STRINGSTRING
APW35972.1 APW35972.1 APW40422.1 APW40422.1 bamE bamE lptE lptE APW36329.1 APW36329.1 flgH flgH APW36667.1 APW36667.1 APW36683.1 APW36683.1 APW36698.1 APW36698.1 APW36807.1 APW36807.1 APW36821.1 APW36821.1 APW36822.1 APW36822.1 APW36823.1 APW36823.1 APW37019.1 APW37019.1 APW40532.1 APW40532.1 APW37085.1 APW37085.1 APW37116.1 APW37116.1 APW37446.1 APW37446.1 APW40605.1 APW40605.1 APW37599.1 APW37599.1 APW37602.1 APW37602.1 APW37698.1 APW37698.1 dnaK dnaK APW37776.1 APW37776.1 APW37779.1 APW37779.1 APW37807.1 APW37807.1 APW37848.1 APW37848.1 APW38231.1 APW38231.1 APW40735.1 APW40735.1 APW38559.1 APW38559.1 flgH-2 flgH-2 APW38616.1 APW38616.1 APW38853.1 APW38853.1 bamB bamB bamD bamD APW38925.1 APW38925.1 APW39028.1 APW39028.1 APW40801.1 APW40801.1 APW40813.1 APW40813.1 bamA bamA APW39333.1 APW39333.1 APW39360.1 APW39360.1 APW40850.1 APW40850.1 APW39501.1 APW39501.1 APW40871.1 APW40871.1 APW39576.1 APW39576.1 APW39667.1 APW39667.1 APW39729.1 APW39729.1 APW39833.1 APW39833.1 APW40011.1 APW40011.1 APW40029.1 APW40029.1 lptA lptA APW40973.1 APW40973.1 APW40978.1 APW40978.1 lptD lptD
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
APW35972.1Copper oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (470 aa)
APW40422.1TonB-dependent siderophore receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (702 aa)
bamECell envelope protein SmpA; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. (187 aa)
lptEHypothetical protein; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane; Belongs to the LptE lipoprotein family. (169 aa)
APW36329.1P-type conjugative transfer protein TrbG; Derived by automated computational analysis using gene prediction method: Protein Homology. (340 aa)
flgHFlagellar biosynthesis protein FlgH; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation. (236 aa)
APW36667.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (318 aa)
APW36683.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (206 aa)
APW36698.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (214 aa)
APW36807.1Type II secretion system protein GspD; Derived by automated computational analysis using gene prediction method: Protein Homology. (761 aa)
APW36821.1Porin; Derived by automated computational analysis using gene prediction method: Protein Homology. (420 aa)
APW36822.1Porin; Derived by automated computational analysis using gene prediction method: Protein Homology. (348 aa)
APW36823.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (372 aa)
APW37019.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (218 aa)
APW40532.1Maltoporin; Derived by automated computational analysis using gene prediction method: Protein Homology. (385 aa)
APW37085.1Outer membrane protein assembly factor BamE; Derived by automated computational analysis using gene prediction method: Protein Homology. (168 aa)
APW37116.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (213 aa)
APW37446.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (643 aa)
APW40605.1Polysaccharide export protein EpsE; Derived by automated computational analysis using gene prediction method: Protein Homology. (264 aa)
APW37599.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (358 aa)
APW37602.1Lytic transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (281 aa)
APW37698.1TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (613 aa)
dnaKMolecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. (661 aa)
APW37776.1Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (572 aa)
APW37779.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (382 aa)
APW37807.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (342 aa)
APW37848.1Hypothetical protein; Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety; Belongs to the PagL family. (189 aa)
APW38231.1Channel protein TolC; Derived by automated computational analysis using gene prediction method: Protein Homology. (440 aa)
APW40735.1TonB-dependent siderophore receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (698 aa)
APW38559.1Hypothetical protein; Involved in the storage or transport of lipids necessary for membrane maintenance under stressful conditions. Displays a binding preference for lysophospholipids. (224 aa)
flgH-2Flagellar biosynthesis protein FlgH; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation. (237 aa)
APW38616.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (213 aa)
APW38853.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial secretin family. (203 aa)
bamBOuter membrane protein assembly factor BamB; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. (373 aa)
bamDOuter membrane protein assembly factor BamD; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. (271 aa)
APW38925.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (355 aa)
APW39028.1Lytic transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (278 aa)
APW40801.1Lytic transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (198 aa)
APW40813.1TonB-dependent siderophore receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (723 aa)
bamAOuter membrane protein assembly factor BamA; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. (765 aa)
APW39333.1Secretin; Derived by automated computational analysis using gene prediction method: Protein Homology. (712 aa)
APW39360.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (156 aa)
APW40850.1TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (747 aa)
APW39501.1Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (210 aa)
APW40871.1TonB-dependent siderophore receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (724 aa)
APW39576.1TonB-dependent siderophore receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (701 aa)
APW39667.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (384 aa)
APW39729.1Outer envelope protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (272 aa)
APW39833.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (649 aa)
APW40011.1Phospholipase; Hydrolysis of phosphatidylcholine with phospholipase A2 (EC 3.1.1.4) and phospholipase A1 (EC 3.1.1.32) activities. Belongs to the phospholipase A1 family. (404 aa)
APW40029.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (169 aa)
lptALipopolysaccharide transport periplasmic protein LptA; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. (207 aa)
APW40973.1Feruloyl esterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (553 aa)
APW40978.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (156 aa)
lptDLPS biosynthesis protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. (798 aa)
Your Current Organism:
Rhodoferax koreense
NCBI taxonomy Id: 1842727
Other names: JCM 31441, KCTC 52288, R. koreense, Rhodoferax sp. DCY110, strain DCY110
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