STRINGSTRING
APW35941.1 APW35941.1 APW35972.1 APW35972.1 APW40422.1 APW40422.1 APW36226.1 APW36226.1 bamE bamE lptE lptE APW36329.1 APW36329.1 APW36454.1 APW36454.1 APW36536.1 APW36536.1 flgI flgI flgH flgH APW36667.1 APW36667.1 APW36681.1 APW36681.1 APW36683.1 APW36683.1 APW36698.1 APW36698.1 APW40488.1 APW40488.1 APW36703.1 APW36703.1 APW36777.1 APW36777.1 APW36781.1 APW36781.1 APW36807.1 APW36807.1 APW36810.1 APW36810.1 APW36821.1 APW36821.1 APW36822.1 APW36822.1 APW36823.1 APW36823.1 APW40502.1 APW40502.1 APW36889.1 APW36889.1 APW37019.1 APW37019.1 APW40532.1 APW40532.1 APW37074.1 APW37074.1 APW37085.1 APW37085.1 APW37116.1 APW37116.1 APW40553.1 APW40553.1 APW37206.1 APW37206.1 APW40557.1 APW40557.1 APW37340.1 APW37340.1 APW37446.1 APW37446.1 APW40605.1 APW40605.1 APW37564.1 APW37564.1 APW37599.1 APW37599.1 APW37602.1 APW37602.1 APW37698.1 APW37698.1 APW37728.1 APW37728.1 dnaK dnaK APW37776.1 APW37776.1 APW37779.1 APW37779.1 APW37799.1 APW37799.1 APW37802.1 APW37802.1 APW37807.1 APW37807.1 APW37841.1 APW37841.1 APW37842.1 APW37842.1 APW37848.1 APW37848.1 APW37901.1 APW37901.1 cpoB cpoB APW38036.1 APW38036.1 APW40680.1 APW40680.1 APW38141.1 APW38141.1 APW38231.1 APW38231.1 APW38257.1 APW38257.1 APW40712.1 APW40712.1 APW38352.1 APW38352.1 APW38415.1 APW38415.1 APW40735.1 APW40735.1 APW38542.1 APW38542.1 APW38559.1 APW38559.1 flgH-2 flgH-2 APW38616.1 APW38616.1 APW38755.1 APW38755.1 APW38853.1 APW38853.1 APW38863.1 APW38863.1 bamB bamB bamD bamD APW38922.1 APW38922.1 APW38925.1 APW38925.1 APW39028.1 APW39028.1 APW39045.1 APW39045.1 APW40801.1 APW40801.1 APW40813.1 APW40813.1 APW39151.1 APW39151.1 APW39174.1 APW39174.1 bamA bamA APW39333.1 APW39333.1 APW39360.1 APW39360.1 APW39367.1 APW39367.1 APW40850.1 APW40850.1 APW39501.1 APW39501.1 APW40871.1 APW40871.1 APW39576.1 APW39576.1 APW39595.1 APW39595.1 APW39624.1 APW39624.1 APW39667.1 APW39667.1 APW39729.1 APW39729.1 APW39833.1 APW39833.1 APW39871.1 APW39871.1 APW40933.1 APW40933.1 APW39952.1 APW39952.1 APW40011.1 APW40011.1 APW40023.1 APW40023.1 APW40029.1 APW40029.1 APW40119.1 APW40119.1 lptA lptA APW40973.1 APW40973.1 APW40978.1 APW40978.1 surA surA lptD lptD
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
APW35941.1ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (537 aa)
APW35972.1Copper oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (470 aa)
APW40422.1TonB-dependent siderophore receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (702 aa)
APW36226.1LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (317 aa)
bamECell envelope protein SmpA; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. (187 aa)
lptEHypothetical protein; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane; Belongs to the LptE lipoprotein family. (169 aa)
APW36329.1P-type conjugative transfer protein TrbG; Derived by automated computational analysis using gene prediction method: Protein Homology. (340 aa)
APW36454.1Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (298 aa)
APW36536.1Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (367 aa)
flgIFlagellar biosynthesis protein FlgI; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation. (380 aa)
flgHFlagellar biosynthesis protein FlgH; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation. (236 aa)
APW36667.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (318 aa)
APW36681.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (242 aa)
APW36683.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (206 aa)
APW36698.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (214 aa)
APW40488.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (250 aa)
APW36703.1Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (254 aa)
APW36777.1C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (321 aa)
APW36781.1Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (507 aa)
APW36807.1Type II secretion system protein GspD; Derived by automated computational analysis using gene prediction method: Protein Homology. (761 aa)
APW36810.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (431 aa)
APW36821.1Porin; Derived by automated computational analysis using gene prediction method: Protein Homology. (420 aa)
APW36822.1Porin; Derived by automated computational analysis using gene prediction method: Protein Homology. (348 aa)
APW36823.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (372 aa)
APW40502.1ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (526 aa)
APW36889.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (394 aa)
APW37019.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (218 aa)
APW40532.1Maltoporin; Derived by automated computational analysis using gene prediction method: Protein Homology. (385 aa)
APW37074.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (256 aa)
APW37085.1Outer membrane protein assembly factor BamE; Derived by automated computational analysis using gene prediction method: Protein Homology. (168 aa)
APW37116.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (213 aa)
APW40553.1ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (261 aa)
APW37206.1Peptidase S41; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S41A family. (477 aa)
APW40557.1ABC transporter substrate-binding protein; DppABCDF is involved in the transport of dipeptides; also binds heme and mediates chemotaxis to dipeptides; Derived by automated computational analysis using gene prediction method: Protein Homology. (532 aa)
APW37340.1Sugar ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (341 aa)
APW37446.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (643 aa)
APW40605.1Polysaccharide export protein EpsE; Derived by automated computational analysis using gene prediction method: Protein Homology. (264 aa)
APW37564.1N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (478 aa)
APW37599.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (358 aa)
APW37602.1Lytic transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (281 aa)
APW37698.1TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (613 aa)
APW37728.1ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (244 aa)
dnaKMolecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. (661 aa)
APW37776.1Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (572 aa)
APW37779.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (382 aa)
APW37799.1C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (328 aa)
APW37802.1C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (329 aa)
APW37807.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (342 aa)
APW37841.1Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (356 aa)
APW37842.1LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (323 aa)
APW37848.1Hypothetical protein; Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety; Belongs to the PagL family. (189 aa)
APW37901.1C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (323 aa)
cpoBTol-pal system protein YbgF; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family. (273 aa)
APW38036.1ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (282 aa)
APW40680.1Peptide ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (533 aa)
APW38141.1Ribose ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (374 aa)
APW38231.1Channel protein TolC; Derived by automated computational analysis using gene prediction method: Protein Homology. (440 aa)
APW38257.1ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (616 aa)
APW40712.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (248 aa)
APW38352.1Molybdate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (249 aa)
APW38415.1Molybdenum ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (229 aa)
APW40735.1TonB-dependent siderophore receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (698 aa)
APW38542.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (272 aa)
APW38559.1Hypothetical protein; Involved in the storage or transport of lipids necessary for membrane maintenance under stressful conditions. Displays a binding preference for lysophospholipids. (224 aa)
flgH-2Flagellar biosynthesis protein FlgH; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation. (237 aa)
APW38616.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (213 aa)
APW38755.1Glutathione ABC transporter substrate-binding protein GsiB; Derived by automated computational analysis using gene prediction method: Protein Homology. (511 aa)
APW38853.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial secretin family. (203 aa)
APW38863.1ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (524 aa)
bamBOuter membrane protein assembly factor BamB; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. (373 aa)
bamDOuter membrane protein assembly factor BamD; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. (271 aa)
APW38922.1ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (536 aa)
APW38925.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (355 aa)
APW39028.1Lytic transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (278 aa)
APW39045.1Protein TolA; Derived by automated computational analysis using gene prediction method: Protein Homology. (336 aa)
APW40801.1Lytic transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (198 aa)
APW40813.1TonB-dependent siderophore receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (723 aa)
APW39151.1Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology. (234 aa)
APW39174.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the skp family. (176 aa)
bamAOuter membrane protein assembly factor BamA; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. (765 aa)
APW39333.1Secretin; Derived by automated computational analysis using gene prediction method: Protein Homology. (712 aa)
APW39360.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (156 aa)
APW39367.1ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (357 aa)
APW40850.1TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (747 aa)
APW39501.1Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (210 aa)
APW40871.1TonB-dependent siderophore receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (724 aa)
APW39576.1TonB-dependent siderophore receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (701 aa)
APW39595.1ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (300 aa)
APW39624.1ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (344 aa)
APW39667.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (384 aa)
APW39729.1Outer envelope protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (272 aa)
APW39833.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (649 aa)
APW39871.1ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (513 aa)
APW40933.1Membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family; Derived by automated computational analysis using gene prediction method: Protein Homology. (822 aa)
APW39952.1ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (539 aa)
APW40011.1Phospholipase; Hydrolysis of phosphatidylcholine with phospholipase A2 (EC 3.1.1.4) and phospholipase A1 (EC 3.1.1.32) activities. Belongs to the phospholipase A1 family. (404 aa)
APW40023.1TRAP dicarboxylate transporter subunit DctP; Derived by automated computational analysis using gene prediction method: Protein Homology. (329 aa)
APW40029.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (169 aa)
APW40119.1Peptide ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (631 aa)
lptALipopolysaccharide transport periplasmic protein LptA; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. (207 aa)
APW40973.1Feruloyl esterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (553 aa)
APW40978.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (156 aa)
surAMolecular chaperone SurA; Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation. (455 aa)
lptDLPS biosynthesis protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. (798 aa)
Your Current Organism:
Rhodoferax koreense
NCBI taxonomy Id: 1842727
Other names: JCM 31441, KCTC 52288, R. koreense, Rhodoferax sp. DCY110, strain DCY110
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