9 items (Rhodoferax koreense) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APW40874.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (294 aa)
	APW35828.1	NADPH-dependent ferric siderophore reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (283 aa)
	APW40735.1	TonB-dependent siderophore receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (698 aa)
	APW39045.1	Protein TolA; Derived by automated computational analysis using gene prediction method: Protein Homology. (336 aa)
	APW40813.1	TonB-dependent siderophore receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (723 aa)
	APW39151.1	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology. (234 aa)
	APW40850.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (747 aa)
	APW40871.1	TonB-dependent siderophore receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (724 aa)
	APW39576.1	TonB-dependent siderophore receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (701 aa)

Your Current Organism:

Rhodoferax koreense

NCBI taxonomy Id: 1842727
Other names: JCM 31441, KCTC 52288, R. koreense, Rhodoferax sp. DCY110, strain DCY110

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APW35828.1	APW40850.1	RD110_00185	RD110_21245	NADPH-dependent ferric siderophore reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.420
APW39045.1	APW39576.1	RD110_19035	RD110_22145	Protein TolA; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent siderophore receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.463
APW39045.1	APW40735.1	RD110_19035	RD110_15980	Protein TolA; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent siderophore receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.868
APW39045.1	APW40850.1	RD110_19035	RD110_21245	Protein TolA; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.505
APW39151.1	APW39576.1	RD110_19640	RD110_22145	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent siderophore receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.551
APW39151.1	APW40735.1	RD110_19640	RD110_15980	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent siderophore receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.905
APW39151.1	APW40813.1	RD110_19640	RD110_19620	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent siderophore receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.450
APW39151.1	APW40850.1	RD110_19640	RD110_21245	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.728
APW39576.1	APW39045.1	RD110_22145	RD110_19035	TonB-dependent siderophore receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protein TolA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.463
APW39576.1	APW39151.1	RD110_22145	RD110_19640	TonB-dependent siderophore receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.551
APW39576.1	APW40735.1	RD110_22145	RD110_15980	TonB-dependent siderophore receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent siderophore receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.574
APW39576.1	APW40850.1	RD110_22145	RD110_21245	TonB-dependent siderophore receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.733
APW40735.1	APW39045.1	RD110_15980	RD110_19035	TonB-dependent siderophore receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protein TolA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.868
APW40735.1	APW39151.1	RD110_15980	RD110_19640	TonB-dependent siderophore receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.905
APW40735.1	APW39576.1	RD110_15980	RD110_22145	TonB-dependent siderophore receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent siderophore receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.574
APW40735.1	APW40850.1	RD110_15980	RD110_21245	TonB-dependent siderophore receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.793
APW40735.1	APW40871.1	RD110_15980	RD110_22090	TonB-dependent siderophore receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent siderophore receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.479
APW40735.1	APW40874.1	RD110_15980	RD110_22125	TonB-dependent siderophore receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.464
APW40813.1	APW39151.1	RD110_19620	RD110_19640	TonB-dependent siderophore receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.450
APW40850.1	APW35828.1	RD110_21245	RD110_00185	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	NADPH-dependent ferric siderophore reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.420