STRINGSTRING
APW36125.1 APW36125.1 APW40422.1 APW40422.1 bamE bamE lptE lptE APW36698.1 APW36698.1 APW36786.1 APW36786.1 APW36812.1 APW36812.1 APW37042.1 APW37042.1 APW37048.1 APW37048.1 APW37085.1 APW37085.1 rlpA rlpA APW37446.1 APW37446.1 APW37599.1 APW37599.1 APW37602.1 APW37602.1 dnaK dnaK APW37848.1 APW37848.1 APW40662.1 APW40662.1 APW37980.1 APW37980.1 pal pal APW38206.1 APW38206.1 APW38273.1 APW38273.1 APW40735.1 APW40735.1 APW38559.1 APW38559.1 APW38606.1 APW38606.1 APW38853.1 APW38853.1 bamB bamB bamD bamD APW39012.1 APW39012.1 APW39028.1 APW39028.1 APW40801.1 APW40801.1 APW40813.1 APW40813.1 bamA bamA APW39333.1 APW39333.1 APW40841.1 APW40841.1 APW39360.1 APW39360.1 APW40850.1 APW40850.1 APW40871.1 APW40871.1 APW39576.1 APW39576.1 APW39804.1 APW39804.1 APW39833.1 APW39833.1 APW40011.1 APW40011.1 APW40978.1 APW40978.1 APW40254.1 APW40254.1 lptD lptD
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
APW36125.1Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Prx5 subfamily. (168 aa)
APW40422.1TonB-dependent siderophore receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (702 aa)
bamECell envelope protein SmpA; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. (187 aa)
lptEHypothetical protein; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane; Belongs to the LptE lipoprotein family. (169 aa)
APW36698.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (214 aa)
APW36786.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (219 aa)
APW36812.1General secretion pathway protein J; Derived by automated computational analysis using gene prediction method: Protein Homology. (225 aa)
APW37042.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (192 aa)
APW37048.1Murein transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (430 aa)
APW37085.1Outer membrane protein assembly factor BamE; Derived by automated computational analysis using gene prediction method: Protein Homology. (168 aa)
rlpAHypothetical protein; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides. (172 aa)
APW37446.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (643 aa)
APW37599.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (358 aa)
APW37602.1Lytic transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (281 aa)
dnaKMolecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. (661 aa)
APW37848.1Hypothetical protein; Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety; Belongs to the PagL family. (189 aa)
APW40662.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (220 aa)
APW37980.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (446 aa)
palPeptidoglycan-associated lipoprotein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. (175 aa)
APW38206.1Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (264 aa)
APW38273.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (827 aa)
APW40735.1TonB-dependent siderophore receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (698 aa)
APW38559.1Hypothetical protein; Involved in the storage or transport of lipids necessary for membrane maintenance under stressful conditions. Displays a binding preference for lysophospholipids. (224 aa)
APW38606.1Lytic murein transglycosylase B; Derived by automated computational analysis using gene prediction method: Protein Homology. (358 aa)
APW38853.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial secretin family. (203 aa)
bamBOuter membrane protein assembly factor BamB; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. (373 aa)
bamDOuter membrane protein assembly factor BamD; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. (271 aa)
APW39012.1Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (646 aa)
APW39028.1Lytic transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (278 aa)
APW40801.1Lytic transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (198 aa)
APW40813.1TonB-dependent siderophore receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (723 aa)
bamAOuter membrane protein assembly factor BamA; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. (765 aa)
APW39333.1Secretin; Derived by automated computational analysis using gene prediction method: Protein Homology. (712 aa)
APW40841.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (601 aa)
APW39360.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (156 aa)
APW40850.1TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (747 aa)
APW40871.1TonB-dependent siderophore receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (724 aa)
APW39576.1TonB-dependent siderophore receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (701 aa)
APW39804.1Extensin; Derived by automated computational analysis using gene prediction method: Protein Homology. (246 aa)
APW39833.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (649 aa)
APW40011.1Phospholipase; Hydrolysis of phosphatidylcholine with phospholipase A2 (EC 3.1.1.4) and phospholipase A1 (EC 3.1.1.32) activities. Belongs to the phospholipase A1 family. (404 aa)
APW40978.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (156 aa)
APW40254.1Transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (414 aa)
lptDLPS biosynthesis protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. (798 aa)
Your Current Organism:
Rhodoferax koreense
NCBI taxonomy Id: 1842727
Other names: JCM 31441, KCTC 52288, R. koreense, Rhodoferax sp. DCY110, strain DCY110
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