(17 nodes) Acyl-CoA oxidase/dehydrogenase, middle domain network (Rhodoferax koreense)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APW36056.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (386 aa)
	APW36548.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (598 aa)
	RD110_09770	MarR family transcriptional regulator; Incomplete; partial on complete genome; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology. (385 aa)
	APW37777.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (579 aa)
	APW38305.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (385 aa)
	APW38407.1	DNA alkylation response protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (576 aa)
	APW38533.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (411 aa)
	APW38589.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (596 aa)
	APW38780.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (396 aa)
	APW40790.1	isovaleryl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (561 aa)
	APW39080.1	pimeloyl-CoA dehydrogenase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology. (392 aa)
	APW39212.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (395 aa)
	APW39384.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (385 aa)
	APW39393.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (395 aa)
	APW39734.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (375 aa)
	APW39753.1	acyl-CoA dehydrogenase; Catalyzes the formation of 3-methylbut-2-enoyl CoA from 3-methylbutanoyl CoA; Derived by automated computational analysis using gene prediction method: Protein Homology. (393 aa)
	APW40272.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (382 aa)

Your Current Organism:

Rhodoferax koreense

NCBI taxonomy Id: 1842727
Other names: JCM 31441, KCTC 52288, R. koreense, Rhodoferax sp. DCY110, strain DCY110

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APW36056.1	APW38780.1	RD110_01570	RD110_17510	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.924
APW38407.1	APW38780.1	RD110_15390	RD110_17510	DNA alkylation response protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.915
APW38407.1	APW39080.1	RD110_15390	RD110_19240	DNA alkylation response protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	pimeloyl-CoA dehydrogenase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.442
APW38533.1	APW38780.1	RD110_16085	RD110_17510	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.905
APW38533.1	APW40790.1	RD110_16085	RD110_18410	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	isovaleryl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.503
APW38780.1	APW36056.1	RD110_17510	RD110_01570	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.924
APW38780.1	APW38407.1	RD110_17510	RD110_15390	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA alkylation response protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.915
APW38780.1	APW38533.1	RD110_17510	RD110_16085	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.905
APW38780.1	APW39212.1	RD110_17510	RD110_19975	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.920
APW38780.1	APW39734.1	RD110_17510	RD110_23115	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.920
APW38780.1	APW40272.1	RD110_17510	RD110_26270	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.920
APW39080.1	APW38407.1	RD110_19240	RD110_15390	pimeloyl-CoA dehydrogenase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA alkylation response protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.442
APW39212.1	APW38780.1	RD110_19975	RD110_17510	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.920
APW39384.1	APW39393.1	RD110_20980	RD110_21025	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.525
APW39393.1	APW39384.1	RD110_21025	RD110_20980	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.525
APW39734.1	APW38780.1	RD110_23115	RD110_17510	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.920
APW40272.1	APW38780.1	RD110_26270	RD110_17510	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.920
APW40790.1	APW38533.1	RD110_18410	RD110_16085	isovaleryl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.503
APW40790.1	RD110_09770	RD110_18410	RD110_09770	isovaleryl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	MarR family transcriptional regulator; Incomplete; partial on complete genome; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.546
RD110_09770	APW40790.1	RD110_09770	RD110_18410	MarR family transcriptional regulator; Incomplete; partial on complete genome; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.	isovaleryl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.546