15 items (Rhodoferax koreense) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APW35965.1	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (441 aa)
	APW35973.1	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (473 aa)
	APW40469.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (468 aa)
	APW36718.1	RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (515 aa)
	APW36874.1	RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (484 aa)
	APW37331.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (474 aa)
	APW37362.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (105 aa)
	APW38231.1	Channel protein TolC; Derived by automated computational analysis using gene prediction method: Protein Homology. (440 aa)
	APW38725.1	RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (499 aa)
	APW39618.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (482 aa)
	APW39976.1	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (478 aa)
	APW40052.1	Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (480 aa)
	APW40162.1	RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (465 aa)
	APW40212.1	RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (484 aa)
	APW40250.1	RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (469 aa)

Your Current Organism:

Rhodoferax koreense

NCBI taxonomy Id: 1842727
Other names: JCM 31441, KCTC 52288, R. koreense, Rhodoferax sp. DCY110, strain DCY110

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APW37331.1	APW38231.1	RD110_09105	RD110_14335	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Channel protein TolC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.906
APW37331.1	APW39976.1	RD110_09105	RD110_24510	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.913
APW37331.1	APW40052.1	RD110_09105	RD110_24970	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.909
APW38231.1	APW37331.1	RD110_14335	RD110_09105	Channel protein TolC; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.906
APW38231.1	APW39976.1	RD110_14335	RD110_24510	Channel protein TolC; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.906
APW38231.1	APW40052.1	RD110_14335	RD110_24970	Channel protein TolC; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.906
APW39976.1	APW37331.1	RD110_24510	RD110_09105	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.913
APW39976.1	APW38231.1	RD110_24510	RD110_14335	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Channel protein TolC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.906
APW39976.1	APW40052.1	RD110_24510	RD110_24970	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.908
APW40052.1	APW37331.1	RD110_24970	RD110_09105	Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.909
APW40052.1	APW38231.1	RD110_24970	RD110_14335	Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Channel protein TolC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.906
APW40052.1	APW39976.1	RD110_24970	RD110_24510	Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.908