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| | rpoN | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (506 aa) |
| | AOF96674.1 | Sensory box protein; [T] COG0642 Signal transduction histidine kinase. (807 aa) |
| | AOF98129.1 | GGDEF: diguanylate cyclase domain protein; [T] COG2203 FOG: GAF domain. (331 aa) |
| | AOF97884.1 | Hypothetical protein. (59 aa) |
| | AOF96995.1 | Hypothetical protein. (77 aa) |
| | AOF96695.1 | [NT] COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain. (140 aa) |
| | AOF96508.1 | CBS domain protein; [NT] COG0840 Methyl-accepting chemotaxis protein. (426 aa) |
| | AOF96557.1 | [T] COG2200 FOG: EAL domain. (256 aa) |
| | BSY17_145 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein; [T] COG0642 Signal transduction histidine kinase. (457 aa) |
| | BSY17_146 | Hypothetical protein. (366 aa) |
| | BSY17_147 | Putative membrane protein. (388 aa) |
| | BSY17_148 | Hypothetical protein. (104 aa) |
| | pspF | phageshock_pspF: psp operon transcriptional activator; [KT] COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain. (340 aa) |
| | AOF97408.1 | Hypothetical protein. (222 aa) |
| | AOF95711.1 | GGDEF: diguanylate cyclase domain protein; [T] COG2199 FOG: GGDEF domain. (385 aa) |
| | AOF97940.1 | Bacterial regulatory helix-turn-helix, lysR family protein; [K] COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (281 aa) |
| | AOF98470.1 | Sensory box protein; [T] COG0642 Signal transduction histidine kinase. (749 aa) |
| | AOF97335.1 | Bacterial regulatory s, luxR family protein; [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain. (258 aa) |
| | AOF98154.1 | Sensory box protein; [T] COG2202 FOG: PAS/PAC domain. (195 aa) |
| | AOF95596.1 | GGDEF: diguanylate cyclase domain protein; [T] COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain. (935 aa) |
| | AOF96655.1 | [NT] COG0840 Methyl-accepting chemotaxis protein. (469 aa) |
| | AOF97535.1 | GGDEF: diguanylate cyclase domain protein; [T] COG2199 FOG: GGDEF domain. (593 aa) |
| | AOF96870.1 | Sensory box protein; [T] COG2202 FOG: PAS/PAC domain. (508 aa) |
| | AOF96090.1 | Acetyltransferase family protein; [KR] COG0454 Histone acetyltransferase HPA2 and related acetyltransferases. (165 aa) |
| | AOF95722.1 | Hypothetical protein. (120 aa) |
| | AOF96130.1 | [T] COG0589 Universal stress protein UspA and related nucleotide-binding proteins. (271 aa) |
| | AOF98456.1 | Sensory box protein; [T] COG0642 Signal transduction histidine kinase. (383 aa) |
| | AOF97043.1 | Bacterial regulatory s, luxR family protein; [T] COG4566 Response regulator. (207 aa) |
| | AOF95910.1 | [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain. (207 aa) |
| | AOF95465.1 | GGDEF: diguanylate cyclase domain protein; [T] COG2199 FOG: GGDEF domain. (313 aa) |
| | BSY17_212 | GGDEF: diguanylate cyclase domain protein; [T] COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain. (238 aa) |
| | AOF97240.1 | cheW-like domain protein; [NT] COG0643 Chemotaxis protein histidine kinase and related kinases. (793 aa) |
| | AOF96849.1 | cheW-like domain protein; [NT] COG0835 Chemotaxis signal transduction protein. (145 aa) |
| | AOF96584.1 | Response regulator; [T] COG0784 FOG: CheY-like receiver. (121 aa) |
| | AOF97423.1 | cheB methylesterase family protein; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. (360 aa) |
| | AOF96482.1 | cheR methyltransferase, SAM binding domain protein; [NT] COG1352 Methylase of chemotaxis methyl-accepting proteins. (291 aa) |
| | AOF96654.1 | [NT] COG0840 Methyl-accepting chemotaxis protein. (510 aa) |
| | AOF95698.1 | GGDEF: diguanylate cyclase domain protein; [T] COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain. (765 aa) |
| | AOF97329.1 | Hypothetical protein; Transcriptional regulatory, C terminal family protein; [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain. (242 aa) |
| | AOF95480.1 | Hypothetical protein; Transcriptional regulatory, C terminal family protein; [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain. (236 aa) |
| | AOF98279.1 | HAMP domain protein; [T] COG0642 Signal transduction histidine kinase. (438 aa) |
| | AOF96288.1 | [T] COG0642 Signal transduction histidine kinase. (663 aa) |
| | AOF96722.1 | GGDEF: diguanylate cyclase domain protein; [T] COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain. (553 aa) |
| | AOF97952.1 | Conserved hypothetical protein; [S] COG5385 Uncharacterized protein conserved in bacteria. (215 aa) |
| | AOF97651.1 | Response regulator; [T] COG0642 Signal transduction histidine kinase. (1119 aa) |
| | AOF96008.1 | GGDEF: diguanylate cyclase domain protein; [T] COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain. (660 aa) |
| | BSY17_257 | GGDEF: diguanylate cyclase domain protein; [T] COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain. (767 aa) |
| | miaA | tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. (286 aa) |
| | AOF96079.1 | Hypothetical protein; Transcriptional regulatory, C terminal family protein; [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain. (235 aa) |
| | AOF98268.1 | Sensory box protein; [T] COG0642 Signal transduction histidine kinase. (671 aa) |
| | AOF97616.1 | Sensory box protein; [T] COG2202 FOG: PAS/PAC domain. (654 aa) |
| | hflX | GTP-binding protein HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family. (444 aa) |
| | hfq | RNA chaperone Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. (160 aa) |
| | AOF97432.1 | Bacterial regulatory, Fis family protein; [T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains. (456 aa) |
| | AOF97462.1 | HAMP domain protein; [T] COG5000 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation. (756 aa) |
| | ntrC | Nitrogen regulation protein NR; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. (481 aa) |
| | AOF96100.1 | [T] COG3852 Signal transduction histidine kinase, nitrogen specific. (369 aa) |
| | AOF96095.1 | TIM-barrel, nifR3 family protein; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. (340 aa) |
| | BSY17_417 | [NT] COG0840 Methyl-accepting chemotaxis protein. (459 aa) |
| | BSY17_478 | [T] COG0642 Signal transduction histidine kinase. (1119 aa) |
| | BSY17_527 | GGDEF: diguanylate cyclase domain protein; [T] COG2200 FOG: EAL domain. (684 aa) |
| | BSY17_702 | [NT] COG0840 Methyl-accepting chemotaxis protein. (444 aa) |
| | BSY17_802 | Response regulator; [T] COG0784 FOG: CheY-like receiver. (125 aa) |
| | BSY17_823 | Flagellar FliS family protein; [NUO] COG1516 Flagellin-specific chaperone FliS. (131 aa) |
| | BSY17_824 | Flagellar hook-associated family protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. (467 aa) |
| | BSY17_826 | flhB HrpN YscU SpaS family protein; [NU] COG1377 Flagellar biosynthesis pathway, component FlhB. (378 aa) |
| | fliR | Flagellar biosynthetic protein FliR; Role in flagellar biosynthesis. Belongs to the FliR/MopE/SpaR family. (260 aa) |
| | fliQ | Flagellar biosynthetic protein FliQ; Role in flagellar biosynthesis. Belongs to the FliQ/MopD/SpaQ family. (90 aa) |
| | fliP | Flagellar biosynthetic protein FliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family. (288 aa) |
| | BSY17_830 | Flagellar biosynthesis, FliO family protein. (87 aa) |
| | fliN | Flagellar motor switch protein FliN; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family. (111 aa) |
| | BSY17_832 | [N] COG1868 Flagellar motor switch protein. (294 aa) |
| | BSY17_833 | Flagellar basal body-associated FliL family protein; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family. (206 aa) |
| | BSY17_834 | Hypothetical protein. (297 aa) |
| | BSY17_836 | fliI_yscN: ATPase, FliI/YscN family protein; [NU] COG1157 Flagellar biosynthesis/type III secretory pathway ATPase. (442 aa) |
| | BSY17_837 | Flagellar assembly FliH family protein. (215 aa) |
| | fliG | Flagellar motor switch protein FliG; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. (338 aa) |
| | fliF | Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family. (579 aa) |
| | BSY17_840 | AAA domain family protein; [T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains. (422 aa) |
| | BSY17_841 | Hypothetical protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. (266 aa) |
| | BSY17_844 | fliA_WhiG: RNA polymerase sigma factor, FliA/WhiG family protein; [K] COG1191 DNA-directed RNA polymerase specialized sigma subunit; Belongs to the sigma-70 factor family. (242 aa) |
| | flhA | Flagellar biosynthesis protein FlhA; Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family. (710 aa) |
| | flgM | flgM_jcvi: flagellar biosynthesis anti-sigma factor FlgM. (92 aa) |
| | BSY17_849 | SAF-like family protein. (186 aa) |
| | BSY17_850 | Membrane MotB of proton-channel complex MotA/MotB family protein. (167 aa) |
| | BSY17_851 | motA/TolQ/ExbB proton channel family protein; [N] COG1291 Flagellar motor component. (222 aa) |
| | flgB | Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body. (120 aa) |
| | flgC | flgC: flagellar basal-body rod protein FlgC; [N] COG1558 Flagellar basal body rod protein; Belongs to the flagella basal body rod proteins family. (136 aa) |
| | BSY17_854 | Hypothetical protein; Required for flagellar hook formation. May act as a scaffolding protein. (219 aa) |
| | BSY17_855 | flgEFG_subfam: flagellar hook-basal body family protein; [N] COG4786 Flagellar basal body rod protein. (281 aa) |
| | BSY17_856 | flgEFG_subfam: flagellar hook-basal body family protein; [N] COG4787 Flagellar basal body rod protein. (247 aa) |
| | flgG | flgG_G_neg: flagellar basal-body rod protein FlgG; [N] COG4786 Flagellar basal body rod protein; Belongs to the flagella basal body rod proteins family. (262 aa) |
| | flgH | Flagellar L-ring family protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation. (221 aa) |
| | flgI | Flagellar P-ring family protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation. (415 aa) |
| | BSY17_860 | [MNO] COG3951 Rod binding protein. (102 aa) |
| | flgK | flgK_ends: flagellar hook-associated protein FlgK; [N] COG1256 Flagellar hook-associated protein; Belongs to the flagella basal body rod proteins family. (445 aa) |
| | BSY17_862 | Hypothetical protein; Bacterial flagellin N-terminal helical region family protein; [N] COG1344 Flagellin and related hook-associated proteins. (281 aa) |
| | motA | motA1: flagellar motor stator protein MotA; [N] COG1291 Flagellar motor component. (287 aa) |
| | BSY17_864 | Membrane MotB of proton-channel complex MotA/MotB family protein; [N] COG1360 Flagellar motor protein. (350 aa) |
| | BSY17_865 | HAMP domain protein; [T] COG0642 Signal transduction histidine kinase. (447 aa) |
| | BSY17_867 | Hypothetical protein; Transcriptional regulatory, C terminal family protein; [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain. (239 aa) |
| | BSY17_892 | GGDEF: diguanylate cyclase domain protein; [T] COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain. (569 aa) |
