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| | AOF96236.1 | MAPEG family protein; [R] COG3788 Uncharacterized relative of glutathione S-transferase, MAPEG superfamily. (143 aa) |
| | AOF96907.1 | Hypothetical protein. (294 aa) |
| | AOF95568.1 | [T] COG3707 Response regulator with putative antiterminator output domain. (193 aa) |
| | AOF95546.1 | Beta-lactamase family protein; [V] COG2367 Beta-lactamase class A. (418 aa) |
| | AOF98416.1 | [T] COG0589 Universal stress protein UspA and related nucleotide-binding proteins. (283 aa) |
| | arsC | arsC: arsenate reductase; [P] COG1393 Arsenate reductase and related proteins, glutaredoxin family. (148 aa) |
| | AOF95635.1 | Low molecular weight phosphotyrosine phosphatase family protein; [T] COG0394 Protein-tyrosine-phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. (173 aa) |
| | recJ | recJ: single-stranded-DNA-specific exonuclease RecJ; [L] COG0608 Single-stranded DNA-specific exonuclease. (588 aa) |
| | AOF96519.1 | Xanthorhodopsin; [R] COG5524 Bacteriorhodopsin. (260 aa) |
| | AOF96866.1 | [L] COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair. (476 aa) |
| | AOF95536.1 | Hypothetical protein. (268 aa) |
| | recA | Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. (357 aa) |
| | AOF98240.1 | Response regulator; [T] COG0784 FOG: CheY-like receiver. (118 aa) |
| | AOF96674.1 | Sensory box protein; [T] COG0642 Signal transduction histidine kinase. (807 aa) |
| | BSY17_114 | [R] COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily). (336 aa) |
| | AOF96871.1 | NADH:flavin oxidoreductase / NADH oxidase family protein; [C] COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family. (364 aa) |
| | BSY17_116 | Hypothetical protein. (117 aa) |
| | AOF98129.1 | GGDEF: diguanylate cyclase domain protein; [T] COG2203 FOG: GAF domain. (331 aa) |
| | AOF95629.1 | Conserved hypothetical protein; [S] COG2859 Uncharacterized protein conserved in bacteria. (235 aa) |
| | AOF96713.1 | Meiotically up-regulated protein; Gene 113 family. (397 aa) |
| | AOF98264.1 | FAD binding domain in molybdopterin dehydrogenase family protein; [C] COG1319 Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs. (318 aa) |
| | BSY17_122 | [T] COG0642 Signal transduction histidine kinase. (571 aa) |
| | AOF97831.1 | Redoxin family protein; [O] COG1225 Peroxiredoxin. (177 aa) |
| | recF | DNA replication and repair RecF family protein; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family. (357 aa) |
| | AOF98172.1 | GGDEF: diguanylate cyclase domain protein; [T] COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain. (856 aa) |
| | AOF96995.1 | Hypothetical protein. (77 aa) |
| | AOF96695.1 | [NT] COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain. (140 aa) |
| | AOF96508.1 | CBS domain protein; [NT] COG0840 Methyl-accepting chemotaxis protein. (426 aa) |
| | AOF96557.1 | [T] COG2200 FOG: EAL domain. (256 aa) |
| | AOF96974.1 | GGDEF: diguanylate cyclase domain protein; [T] COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain. (760 aa) |
| | uppP | Undecaprenyl-diphosphatase UppP; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family. (269 aa) |
| | AOF97356.1 | Conserved hypothetical protein; [S] COG3685 Uncharacterized protein conserved in bacteria. (167 aa) |
| | AOF95705.1 | dnaJ domain protein; [O] COG2214 DnaJ-class molecular chaperone. (206 aa) |
| | AOF97657.1 | osmC-like family protein; [O] COG1765 Predicted redox protein, regulator of disulfide bond formation. (138 aa) |
| | AOF97388.1 | Response regulator; [T] COG0784 FOG: CheY-like receiver. (116 aa) |
| | AOF96750.1 | Sugar (and other) transporter family protein; [GEPR] COG0477 Permeases of the major facilitator superfamily. (424 aa) |
| | AOF97245.1 | Multi-copper polyphenol oxidoreductase laccase family protein; [S] COG1496 Uncharacterized conserved protein; Belongs to the multicopper oxidase YfiH/RL5 family. (241 aa) |
| | BSY17_137 | Response regulator; [T] COG0784 FOG: CheY-like receiver. (151 aa) |
| | AOF98092.1 | Catalase family protein; [P] COG0753 Catalase; Belongs to the catalase family. (555 aa) |
| | BSY17_139 | [C] COG1017 Hemoglobin-like flavoprotein; Belongs to the globin family. (148 aa) |
| | AOF97502.1 | DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated; [R] COG1201 Lhr-like helicases. (802 aa) |
| | AOF96753.1 | R_switched_YjbE: integral membrane, YjbE family protein; [P] COG0861 Membrane protein TerC, possibly involved in tellurium resistance. (225 aa) |
| | msrB | methionine-R-sulfoxide reductase; [O] COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase; Belongs to the MsrB Met sulfoxide reductase family. (133 aa) |
| | BSY17_143 | Glutathione-dependent formaldehyde-activating enzyme family protein; [S] COG3791 Uncharacterized conserved protein. (131 aa) |
| | BSY17_145 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein; [T] COG0642 Signal transduction histidine kinase. (457 aa) |
| | xth | exoDNase_III: exodeoxyribonuclease III; [L] COG0708 Exonuclease III. (265 aa) |
| | mutS | DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. (880 aa) |
| | dinB | Hypothetical protein; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. (362 aa) |
| | BSY17_148 | Hypothetical protein. (104 aa) |
| | ruvB | Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. (340 aa) |
| | ruvA | Hypothetical protein; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. (202 aa) |
| | mutY | A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. (357 aa) |
| | clpB | ATP-dependent chaperone protein ClpB; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family. (859 aa) |
| | pspA | phageshock_pspA: phage shock protein A; [KT] COG1842 Phage shock protein A (IM30), suppresses sigma54-dependent transcription. (222 aa) |
| | pspB | phageshock_pspB: phage shock protein B. (88 aa) |
| | uvrB | Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] (727 aa) |
| | AOF98009.1 | yccV: hemimethylated DNA binding domain protein; [S] COG3785 Uncharacterized conserved protein. (123 aa) |
| | AOF95556.1 | FIST N domain protein; [S] COG3287 Uncharacterized conserved protein. (386 aa) |
| | AOF98470.1 | Sensory box protein; [T] COG0642 Signal transduction histidine kinase. (749 aa) |
| | AOF95464.1 | Hypothetical protein. (289 aa) |
| | msrB-2 | methionine-R-sulfoxide reductase; [O] COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase. (160 aa) |
| | AOF96943.1 | SAM_7_link_chp: putative DNA metabolism protein; [L] COG1573 Uracil-DNA glycosylase. (467 aa) |
| | AOF97611.1 | 4Fe-4S single cluster domain protein; [R] COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif. (414 aa) |
| | AOF97667.1 | Hypothetical protein. (429 aa) |
| | AOF96041.1 | Peptidase M13 family protein; [O] COG3590 Predicted metalloendopeptidase. (681 aa) |
| | AOF95596.1 | GGDEF: diguanylate cyclase domain protein; [T] COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain. (935 aa) |
| | sufC | sufC: FeS assembly ATPase SufC; [O] COG0396 ABC-type transport system involved in Fe-S cluster assembly, ATPase component. (253 aa) |
| | AOF96142.1 | [K] COG2207 AraC-type DNA-binding domain-containing proteins. (314 aa) |
| | recQ | recQ: ATP-dependent DNA helicase RecQ; [L] COG0514 Superfamily II DNA helicase. (590 aa) |
| | AOF97176.1 | Conserved hypothetical protein; [S] COG3803 Uncharacterized protein conserved in bacteria. (191 aa) |
| | AOF95584.1 | Bacterial transferase hexapeptide family protein; [R] COG0110 Acetyltransferase (isoleucine patch superfamily). (253 aa) |
| | AOF97500.1 | uvrB/uvrC motif family protein. (108 aa) |
| | AOF96655.1 | [NT] COG0840 Methyl-accepting chemotaxis protein. (469 aa) |
| | AOF95580.1 | Restriction endonuclease BglII family protein. (268 aa) |
| | AOF96345.1 | Hypothetical protein. (156 aa) |
| | AOF95920.1 | Hypothetical protein. (313 aa) |
| | AOF98496.1 | GAF domain protein; [T] COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase). (853 aa) |
| | katA | Catalase; [P] COG0753 Catalase. (499 aa) |
| | AOF96056.1 | merC mercury resistance family protein. (125 aa) |
| | AOF95928.1 | Conserved hypothetical protein; [S] COG2879 Uncharacterized small protein. (61 aa) |
| | AOF96031.1 | [T] COG1966 Carbon starvation protein, predicted membrane protein. (682 aa) |
| | AOF96605.1 | [M] COG5009 Membrane carboxypeptidase/penicillin-binding protein. (845 aa) |
| | AOF97166.1 | DSBA-like thioredoxin domain protein; [O] COG1651 Protein-disulfide isomerase. (236 aa) |
| | polA | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. (926 aa) |
| | AOF96954.1 | Response regulator; [T] COG0784 FOG: CheY-like receiver. (144 aa) |
| | AOF96870.1 | Sensory box protein; [T] COG2202 FOG: PAS/PAC domain. (508 aa) |
| | AOF96765.1 | hhH-GPD superbase excision DNA repair family protein; [L] COG0122 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase. (205 aa) |
| | sugE | Quaternary ammonium compound-resistance protein sugE; [P] COG2076 Membrane transporters of cations and cationic drugs. (106 aa) |
| | AOF96130.1 | [T] COG0589 Universal stress protein UspA and related nucleotide-binding proteins. (271 aa) |
| | AOF98456.1 | Sensory box protein; [T] COG0642 Signal transduction histidine kinase. (383 aa) |
| | AOF97043.1 | Bacterial regulatory s, luxR family protein; [T] COG4566 Response regulator. (207 aa) |
| | AOF95910.1 | [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain. (207 aa) |
| | lptD | Organic solvent tolerance family protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family. (753 aa) |
| | AOF95901.1 | Hpt domain protein. (146 aa) |
| | AOF98409.1 | osmo_induc_OsmC: peroxiredoxin, OsmC subfamily protein; [O] COG1764 Predicted redox protein, regulator of disulfide bond formation. (143 aa) |
| | AOF97234.1 | Ogt: methylated-DNA--[]-cysteine S-methyltransferase family protein; [F] COG2169 Adenosine deaminase. (372 aa) |
| | AOF95465.1 | GGDEF: diguanylate cyclase domain protein; [T] COG2199 FOG: GGDEF domain. (313 aa) |
| | recR | Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. (198 aa) |
| | phoB | phoB: phosphate regulon transcriptional regulatory protein PhoB; [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain. (233 aa) |
| | AOF97948.1 | Sensory box protein; [T] COG0642 Signal transduction histidine kinase. (428 aa) |
| | AOF96585.1 | Putative hpr(Ser) kinase/phosphatase. (287 aa) |
| | AOF97494.1 | Redoxin family protein; [O] COG1225 Peroxiredoxin. (154 aa) |
| | xth-2 | exoDNase_III: exodeoxyribonuclease III; [L] COG0708 Exonuclease III. (258 aa) |
| | AOF97240.1 | cheW-like domain protein; [NT] COG0643 Chemotaxis protein histidine kinase and related kinases. (793 aa) |
| | AOF96849.1 | cheW-like domain protein; [NT] COG0835 Chemotaxis signal transduction protein. (145 aa) |
| | AOF96584.1 | Response regulator; [T] COG0784 FOG: CheY-like receiver. (121 aa) |
| | AOF97423.1 | cheB methylesterase family protein; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. (360 aa) |
| | AOF96823.1 | dnaJ domain protein; [O] COG2214 DnaJ-class molecular chaperone. (182 aa) |
| | AOF96654.1 | [NT] COG0840 Methyl-accepting chemotaxis protein. (510 aa) |
| | AOF95715.1 | Hemerythrin HHE cation binding domain protein. (145 aa) |
| | AOF96650.1 | Iron/manganese superoxide dismutase, alpha-hairpin domain protein; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. (204 aa) |
| | AOF96621.1 | Histidine kinase family protein; [T] COG2972 Predicted signal transduction protein with a C-terminal ATPase domain. (368 aa) |
| | AOF97362.1 | [KT] COG3279 Response regulator of the LytR/AlgR family. (267 aa) |
| | AOF95698.1 | GGDEF: diguanylate cyclase domain protein; [T] COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain. (765 aa) |
| | arsC-2 | arsC: arsenate reductase; [P] COG1393 Arsenate reductase and related proteins, glutaredoxin family. (114 aa) |
| | grxC | Glutaredoxin 3; Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins. (85 aa) |
| | BSY17_223 | DNA_lig_bact: DNA ligase, ATP-dependent, PP_1105 family; [L] COG1793 ATP-dependent DNA ligase. (527 aa) |
| | AOF97329.1 | Hypothetical protein; Transcriptional regulatory, C terminal family protein; [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain. (242 aa) |
| | AOF95480.1 | Hypothetical protein; Transcriptional regulatory, C terminal family protein; [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain. (236 aa) |
| | AOF98279.1 | HAMP domain protein; [T] COG0642 Signal transduction histidine kinase. (438 aa) |
| | BSY17_224 | Fasciclin domain protein; [M] COG2335 Secreted and surface protein containing fasciclin-like repeats. (187 aa) |
| | AOF95514.1 | carD-like/TRCF domain protein; [K] COG1329 Transcriptional regulators, similar to M. xanthus CarD. (175 aa) |
| | AOF97344.1 | S4 domain protein; [J] COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog). (98 aa) |
| | AOF96195.1 | Hypothetical protein; Helicase conserved C-terminal domain protein; [LKJ] COG0513 Superfamily II DNA and RNA helicases. (904 aa) |
| | AOF97514.1 | Entericidin EcnA/B family protein; [S] COG5510 Predicted small secreted protein. (42 aa) |
| | AOF96288.1 | [T] COG0642 Signal transduction histidine kinase. (663 aa) |
| | AOF97351.1 | Hypothetical protein. (292 aa) |
| | AOF95794.1 | Sulfite exporter TauE/SafE family protein; [R] COG0730 Predicted permeases. (223 aa) |
| | radA | DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. (481 aa) |
| | AOF98048.1 | FAD binding domain of DNA photolyase family protein; [R] COG3046 Uncharacterized protein related to deoxyribodipyrimidine photolyase. (535 aa) |
| | AOF95499.1 | Bacterial regulatory, Fis family protein; [T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains. (481 aa) |
| | nth | Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. (229 aa) |
| | AOF97839.1 | NUDIX domain protein; [LR] COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; Belongs to the Nudix hydrolase family. (135 aa) |
| | uvrC | Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. (652 aa) |
| | recO | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. (244 aa) |
| | apaG | Conserved hypothetical protein; [P] COG2967 Uncharacterized protein affecting Mg2+/Co2+ transport. (132 aa) |
| | AOF95752.1 | Beta-lactamase enzyme family protein; [V] COG2367 Beta-lactamase class A. (413 aa) |
| | AOF96722.1 | GGDEF: diguanylate cyclase domain protein; [T] COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain. (553 aa) |
| | AOF98241.1 | MOSC domain protein; [S] COG2258 Uncharacterized protein conserved in bacteria. (217 aa) |
| | rpoH | Alternative sigma factor RpoH; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes. (304 aa) |
| | AOF97952.1 | Conserved hypothetical protein; [S] COG5385 Uncharacterized protein conserved in bacteria. (215 aa) |
| | AOF97651.1 | Response regulator; [T] COG0642 Signal transduction histidine kinase. (1119 aa) |
| | AOF96008.1 | GGDEF: diguanylate cyclase domain protein; [T] COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain. (660 aa) |
| | AOF97153.1 | Response regulator; [T] COG0784 FOG: CheY-like receiver. (263 aa) |
| | AOF98139.1 | sigma70-ECF: RNA polymerase sigma factor, sigma-70 family protein; [K] COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog. (216 aa) |
| | prsK | PEP_his_kin: putative PEP-CTERM system histidine kinase; [T] COG0642 Signal transduction histidine kinase. (688 aa) |
| | prsR | [T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains. (454 aa) |
| | BSY17_257 | GGDEF: diguanylate cyclase domain protein; [T] COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain. (767 aa) |
| | AOF96938.1 | Hypothetical protein; Belongs to the SOS response-associated peptidase family. (216 aa) |
| | AOF95774.1 | [L] COG1573 Uracil-DNA glycosylase. (220 aa) |
| | BSY17_27 | Hypothetical protein; traG-like, N-terminal region family protein. (1253 aa) |
| | ychF | 50S ribosome-binding GTPase family protein; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner. (366 aa) |
| | AOF97350.1 | Conserved hypothetical protein; [S] COG5455 Predicted integral membrane protein. (148 aa) |
| | BSY17_273 | hypoxanDNAglyco: DNA-deoxyinosine glycosylase; [L] COG3663 G:T/U mismatch-specific DNA glycosylase. (173 aa) |
| | ahpF | ahpF: alkyl hydroperoxide reductase subunit F; [O] COG3634 Alkyl hydroperoxide reductase, large subunit. (526 aa) |
| | ahpC | Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily. (187 aa) |
| | AOF96729.1 | ahpC/TSA family protein; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Prx5 subfamily. (179 aa) |
| | AOF95540.1 | 2OG-Fe(II) oxygenase superfamily protein; [S] COG3128 Uncharacterized iron-regulated protein. (227 aa) |
| | mutL | DNA mismatch repair MutL family protein; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. (594 aa) |
| | AOF96079.1 | Hypothetical protein; Transcriptional regulatory, C terminal family protein; [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain. (235 aa) |
| | AOF95973.1 | Calcineurin-like phosphoesterase family protein; [T] COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases. (257 aa) |
| | AOF98230.1 | [T] COG0589 Universal stress protein UspA and related nucleotide-binding proteins. (144 aa) |
| | AOF98268.1 | Sensory box protein; [T] COG0642 Signal transduction histidine kinase. (671 aa) |
| | AOF96703.1 | PAS fold family protein; [T] COG3920 Signal transduction histidine kinase. (329 aa) |
| | AOF97616.1 | Sensory box protein; [T] COG2202 FOG: PAS/PAC domain. (654 aa) |
| | AOF96413.1 | Bacterial regulatory, Fis family protein; [TK] COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain. (177 aa) |
| | AOF97772.1 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein; [T] COG0642 Signal transduction histidine kinase. (441 aa) |
| | AOF98227.1 | FAD binding domain of DNA photolyase family protein; [L] COG0415 Deoxyribodipyrimidine photolyase; Belongs to the DNA photolyase family. (494 aa) |
| | AOF97631.1 | Yip1 domain protein. (390 aa) |
| | AOF95833.1 | Radical SAM superfamily protein; [L] COG1533 DNA repair photolyase. (354 aa) |
| | AOF95877.1 | [R] COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily). (253 aa) |
| | AOF98270.1 | ahpC/TSA family protein; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Prx5 subfamily. (160 aa) |
| | AOF95756.1 | Sensory box protein; [T] COG2202 FOG: PAS/PAC domain. (782 aa) |
| | addA | addA_alphas: double-strand break repair helicase AddA; [L] COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains); Belongs to the helicase family. UvrD subfamily. (1145 aa) |
| | BSY17_30 | Nucleotidyltransferase domain protein; [R] COG1708 Predicted nucleotidyltransferases. (304 aa) |
| | AOF97432.1 | Bacterial regulatory, Fis family protein; [T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains. (456 aa) |
| | AOF97462.1 | HAMP domain protein; [T] COG5000 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation. (756 aa) |
| | ntrC | Nitrogen regulation protein NR; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. (481 aa) |
| | AOF96100.1 | [T] COG3852 Signal transduction histidine kinase, nitrogen specific. (369 aa) |
| | AOF96752.1 | Hypothetical protein; comEC_N-term: ComEC/Rec2-related domain protein; [R] COG0658 Predicted membrane metal-binding protein. (732 aa) |
| | lexA | Repressor LexA; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. (223 aa) |
| | AOF96552.1 | metA-pathway of phenol degradation family protein. (297 aa) |
| | grxB | GRXB: glutaredoxin, GrxB family; [O] COG2999 Glutaredoxin 2. (214 aa) |
| | AOF96162.1 | Hypothetical protein. (117 aa) |
| | AOF97900.1 | Prolyl oligopeptidase family protein. (549 aa) |
| | AOF98135.1 | Bacterial regulatory s, luxR family protein; [K] COG2771 DNA-binding HTH domain-containing proteins. (250 aa) |
| | AOF97195.1 | Autoinducer synthetase family protein; [TQ] COG3916 N-acyl-L-homoserine lactone synthetase. (211 aa) |
| | msrA | Peptide-methionine (S)-S-oxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. (177 aa) |
| | recN | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. (554 aa) |
| | trxB | TRX_reduct: thioredoxin-disulfide reductase; [O] COG0492 Thioredoxin reductase. (320 aa) |
| | BSY17_382 | [O] COG0386 Glutathione peroxidase; Belongs to the glutathione peroxidase family. (181 aa) |
| | BSY17_385 | Hypothetical protein. (243 aa) |
| | BSY17_387 | Hypothetical protein; Transcriptional regulatory, C terminal family protein; [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain. (221 aa) |
| | BSY17_388 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein; [T] COG0642 Signal transduction histidine kinase. (460 aa) |
| | BSY17_402 | Hypothetical protein. (191 aa) |
| | BSY17_417 | [NT] COG0840 Methyl-accepting chemotaxis protein. (459 aa) |
| | mfd | Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. (1158 aa) |
| | BSY17_436 | Histidine kinase family protein; [T] COG3275 Putative regulator of cell autolysis. (370 aa) |
| | BSY17_437 | [KT] COG3279 Response regulator of the LytR/AlgR family. (247 aa) |
| | uvrA | Excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. (972 aa) |
| | BSY17_45 | 2OG-Fe(II) oxygenase superfamily protein; [L] COG3145 Alkylated DNA repair protein. (197 aa) |
| | BSY17_46 | Hypothetical protein; Belongs to the SOS response-associated peptidase family. (216 aa) |
| | BSY17_468 | Hypothetical protein. (195 aa) |
| | BSY17_47 | Hypothetical protein. (220 aa) |
| | BSY17_478 | [T] COG0642 Signal transduction histidine kinase. (1119 aa) |
| | BSY17_479 | Bacterial regulatory s, luxR family protein; [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain. (307 aa) |
| | BSY17_481 | Response regulator; [T] COG0784 FOG: CheY-like receiver. (145 aa) |
| | BSY17_488 | Copper/zinc superoxide dismutase family protein; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family. (180 aa) |
| | xth-3 | exoDNase_III: exodeoxyribonuclease III; [L] COG0708 Exonuclease III. (273 aa) |
| | BSY17_53 | Hypothetical protein. (243 aa) |
| | BSY17_54 | Hypothetical protein; impB/mucB/samB family C-terminal domain protein; [L] COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair. (445 aa) |
| | BSY17_551 | Trehalose utilization family protein; [S] COG3828 Uncharacterized protein conserved in bacteria. (251 aa) |
| | BSY17_566 | Zinc-binding dehydrogenase family protein; [R] COG2130 Putative NADP-dependent oxidoreductases. (338 aa) |
| | BSY17_567 | Zinc-binding dehydrogenase family protein; [R] COG2130 Putative NADP-dependent oxidoreductases. (330 aa) |
| | BSY17_576 | Zinc-binding dehydrogenase family protein; [R] COG2130 Putative NADP-dependent oxidoreductases. (343 aa) |
| | BSY17_580 | [R] COG0790 FOG: TPR repeat, SEL1 subfamily. (340 aa) |
| | lon | Endopeptidase La; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner. (798 aa) |
| | BSY17_606 | DNA-binding protein, YbaB/EbfC family; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. (107 aa) |
| | BSY17_608 | Beta-lactamase family protein; [V] COG2367 Beta-lactamase class A. (320 aa) |
| | xth-4 | exoDNase_III: exodeoxyribonuclease III; [L] COG0708 Exonuclease III. (267 aa) |
| | ligA | DNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily. (705 aa) |
| | ligD | NHEJ_ligase_prk: DNA ligase D; [L] COG1793 ATP-dependent DNA ligase. (830 aa) |
| | ku | Ku protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. (302 aa) |
| | BSY17_683 | Sugar-transfer associated ATP-grasp family protein. (362 aa) |
| | dnaJ | Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...] (378 aa) |
| | BSY17_695 | Conserved hypothetical protein; [S] COG2847 Uncharacterized protein conserved in bacteria. (157 aa) |
| | BSY17_696 | Conserved hypothetical protein; [S] COG4253 Uncharacterized protein conserved in bacteria. (152 aa) |
| | BSY17_7 | Thioredoxin family protein; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily. (258 aa) |
| | BSY17_70 | [L] COG1793 ATP-dependent DNA ligase. (161 aa) |
| | BSY17_702 | [NT] COG0840 Methyl-accepting chemotaxis protein. (444 aa) |
| | BSY17_71 | Hypothetical protein; [S] COG2135 Uncharacterized conserved protein. (63 aa) |
| | ruvC | Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. (163 aa) |
| | BSY17_714 | Transcriptional regulator PadR-like family protein; [K] COG1695 Predicted transcriptional regulators. (205 aa) |
| | BSY17_741 | Nitronate monooxygenase family protein; [R] COG2070 Dioxygenases related to 2-nitropropane dioxygenase. (337 aa) |
| | BSY17_752 | Oxidoreductase NAD-binding domain protein; [C] COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1. (271 aa) |
| | BSY17_755 | Hypothetical protein; Transcriptional regulatory, C terminal family protein; [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain. (235 aa) |
| | BSY17_756 | HAMP domain protein; [T] COG0642 Signal transduction histidine kinase. (517 aa) |
| | BSY17_757 | Hypothetical protein; HPr Serine kinase C-terminal domain protein; [T] COG1493 Serine kinase of the HPr protein, regulates carbohydrate metabolism. (144 aa) |
| | mutM | DNA-formamidopyrimidine glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. (273 aa) |
| | msrA-2 | Peptide-methionine (S)-S-oxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. (223 aa) |
| | BSY17_797 | [P] COG0861 Membrane protein TerC, possibly involved in tellurium resistance. (261 aa) |
| | BSY17_802 | Response regulator; [T] COG0784 FOG: CheY-like receiver. (125 aa) |
| | fliN | Flagellar motor switch protein FliN; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family. (111 aa) |
| | BSY17_832 | [N] COG1868 Flagellar motor switch protein. (294 aa) |
| | BSY17_833 | Flagellar basal body-associated FliL family protein; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family. (206 aa) |
| | BSY17_835 | Hypothetical protein. (141 aa) |
| | fliG | Flagellar motor switch protein FliG; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. (338 aa) |
| | BSY17_840 | AAA domain family protein; [T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains. (422 aa) |
| | BSY17_850 | Membrane MotB of proton-channel complex MotA/MotB family protein. (167 aa) |
| | BSY17_864 | Membrane MotB of proton-channel complex MotA/MotB family protein; [N] COG1360 Flagellar motor protein. (350 aa) |
| | BSY17_865 | HAMP domain protein; [T] COG0642 Signal transduction histidine kinase. (447 aa) |
| | BSY17_867 | Hypothetical protein; Transcriptional regulatory, C terminal family protein; [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain. (239 aa) |
| | BSY17_892 | GGDEF: diguanylate cyclase domain protein; [T] COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain. (569 aa) |
| | BSY17_904 | Beta-lactamase family protein; [V] COG2367 Beta-lactamase class A. (335 aa) |
| | ung | uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. (228 aa) |
| | BSY17_907 | Antibiotic biosynthesis monooxygenase family protein; [S] COG1359 Uncharacterized conserved protein. (99 aa) |
| | BSY17_911 | HAMP domain protein; [T] COG0642 Signal transduction histidine kinase. (448 aa) |
| | BSY17_912 | Hypothetical protein; Transcriptional regulatory, C terminal family protein; [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain. (238 aa) |
| | BSY17_937 | efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily protein; [GEPR] COG0477 Permeases of the major facilitator superfamily. (404 aa) |
| | BSY17_980 | Hypothetical protein; Transcriptional regulatory, C terminal family protein; [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain. (240 aa) |
| | BSY17_981 | HAMP domain protein; [T] COG0642 Signal transduction histidine kinase. (467 aa) |
| | BSY17_991 | Redoxin family protein; [O] COG0450 Peroxiredoxin. (207 aa) |
