(7 nodes) DNA binding HTH domain, Fis-type network (Sphingobium sp. RAC03)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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Others

textmining

co-expression

protein homology

Your Input:
	prsR	[T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains. (454 aa)
	AOF96413.1	Bacterial regulatory, Fis family protein; [TK] COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain. (177 aa)
	AOF97432.1	Bacterial regulatory, Fis family protein; [T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains. (456 aa)
	ntrC	Nitrogen regulation protein NR; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. (481 aa)
	BSY17_840	AAA domain family protein; [T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains. (422 aa)
	pspF	phageshock_pspF: psp operon transcriptional activator; [KT] COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain. (340 aa)
	AOF95499.1	Bacterial regulatory, Fis family protein; [T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains. (481 aa)

Your Current Organism:

Sphingobium sp. RAC03

NCBI taxonomy Id: 1843368
Other names: S. sp. RAC03

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AOF97432.1	ntrC	BSY17_3006	BSY17_3008	Bacterial regulatory, Fis family protein; [T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains.	Nitrogen regulation protein NR; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes.	0.637
ntrC	AOF97432.1	BSY17_3008	BSY17_3006	Nitrogen regulation protein NR; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes.	Bacterial regulatory, Fis family protein; [T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains.	0.637