(4 nodes) Soluble ligand binding domain network (Sphingobium sp. RAC03)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BSY17_360	[M] COG1596 Periplasmic protein involved in polysaccharide export. (214 aa)
	nuoF	NADH oxidoreductase (quinone), F subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family. (448 aa)
	AOF97849.1	[M] COG1596 Periplasmic protein involved in polysaccharide export. (235 aa)
	BSY17_675	[M] COG1596 Periplasmic protein involved in polysaccharide export. (391 aa)

Your Current Organism:

Sphingobium sp. RAC03

NCBI taxonomy Id: 1843368
Other names: S. sp. RAC03

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AOF97849.1	BSY17_360	BSY17_2499	BSY17_360	[M] COG1596 Periplasmic protein involved in polysaccharide export.	[M] COG1596 Periplasmic protein involved in polysaccharide export.	0.927
AOF97849.1	BSY17_675	BSY17_2499	BSY17_675	[M] COG1596 Periplasmic protein involved in polysaccharide export.	[M] COG1596 Periplasmic protein involved in polysaccharide export.	0.900
BSY17_360	AOF97849.1	BSY17_360	BSY17_2499	[M] COG1596 Periplasmic protein involved in polysaccharide export.	[M] COG1596 Periplasmic protein involved in polysaccharide export.	0.927
BSY17_360	BSY17_675	BSY17_360	BSY17_675	[M] COG1596 Periplasmic protein involved in polysaccharide export.	[M] COG1596 Periplasmic protein involved in polysaccharide export.	0.900
BSY17_675	AOF97849.1	BSY17_675	BSY17_2499	[M] COG1596 Periplasmic protein involved in polysaccharide export.	[M] COG1596 Periplasmic protein involved in polysaccharide export.	0.900
BSY17_675	BSY17_360	BSY17_675	BSY17_360	[M] COG1596 Periplasmic protein involved in polysaccharide export.	[M] COG1596 Periplasmic protein involved in polysaccharide export.	0.900