STRINGSTRING
AOF97414.1 AOF97414.1 AOF96569.1 AOF96569.1 AOF95467.1 AOF95467.1 AOF96182.1 AOF96182.1 AOF96079.1 AOF96079.1 AOF97109.1 AOF97109.1 AOF97169.1 AOF97169.1 AOF97085.1 AOF97085.1 fur fur lexA lexA BSY17_307 BSY17_307 AOF98289.1 AOF98289.1 AOF95888.1 AOF95888.1 AOF95900.1 AOF95900.1 AOF98135.1 AOF98135.1 AOF97012.1 AOF97012.1 BSY17_369 BSY17_369 BSY17_387 BSY17_387 BSY17_4 BSY17_4 rpoD rpoD BSY17_479 BSY17_479 BSY17_484 BSY17_484 BSY17_531 BSY17_531 BSY17_542 BSY17_542 BSY17_554 BSY17_554 BSY17_581 BSY17_581 BSY17_594 BSY17_594 BSY17_677 BSY17_677 BSY17_714 BSY17_714 hrcA hrcA BSY17_738 BSY17_738 BSY17_739 BSY17_739 BSY17_755 BSY17_755 AOF96770.1 AOF96770.1 BSY17_867 BSY17_867 BSY17_873 BSY17_873 BSY17_91 BSY17_91 BSY17_912 BSY17_912 BSY17_938 BSY17_938 BSY17_960 BSY17_960 BSY17_969 BSY17_969 BSY17_98 BSY17_98 BSY17_980 BSY17_980 BSY17_983 BSY17_983 BSY17_990 BSY17_990 AOF98400.1 AOF98400.1 AOF95568.1 AOF95568.1 AOF96404.1 AOF96404.1 AOF96806.1 AOF96806.1 BSY17_111 BSY17_111 BSY17_112 BSY17_112 AOF97972.1 AOF97972.1 AOF96116.1 AOF96116.1 AOF97198.1 AOF97198.1 BSY17_123 BSY17_123 AOF96424.1 AOF96424.1 BSY17_142 BSY17_142 AOF96663.1 AOF96663.1 ruvB ruvB AOF97762.1 AOF97762.1 AOF97940.1 AOF97940.1 AOF98154.1 AOF98154.1 AOF96352.1 AOF96352.1 recQ recQ AOF97161.1 AOF97161.1 AOF97260.1 AOF97260.1 AOF95850.1 AOF95850.1 AOF97043.1 AOF97043.1 AOF95593.1 AOF95593.1 AOF95554.1 AOF95554.1 AOF96889.1 AOF96889.1 AOF95854.1 AOF95854.1 AOF96204.1 AOF96204.1 AOF97234.1 AOF97234.1 phoB phoB dprA dprA AOF96837.1 AOF96837.1 AOF95531.1 AOF95531.1 AOF97329.1 AOF97329.1 AOF95480.1 AOF95480.1 scpB scpB AOF96205.1 AOF96205.1 AOF96581.1 AOF96581.1 AOF98228.1 AOF98228.1 AOF95576.1 AOF95576.1 AOF96851.1 AOF96851.1 AOF95647.1 AOF95647.1 AOF98139.1 AOF98139.1 AOF97863.1 AOF97863.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
AOF97414.1sigma70-ECF: RNA polymerase sigma factor, sigma-70 family protein; [K] COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog. (187 aa)
AOF96569.1Bacterial regulatory helix-turn-helix, lysR family protein; [K] COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (300 aa)
AOF95467.1Bacterial regulatory, arsR family protein; [K] COG0640 Predicted transcriptional regulators. (112 aa)
AOF96182.1Bacterial regulatory helix-turn-helix, lysR family protein; [K] COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (287 aa)
AOF96079.1Hypothetical protein; Transcriptional regulatory, C terminal family protein; [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain. (235 aa)
AOF97109.1asnC-type helix-turn-helix domain protein; [K] COG1522 Transcriptional regulators. (159 aa)
AOF97169.1Bacterial regulatory helix-turn-helix, lysR family protein; [K] COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (309 aa)
AOF97085.1asnC-type helix-turn-helix domain protein; [K] COG1522 Transcriptional regulators. (156 aa)
furFerric uptake regulator family protein; [P] COG0735 Fe2+/Zn2+ uptake regulation proteins; Belongs to the Fur family. (140 aa)
lexARepressor LexA; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. (223 aa)
BSY17_307iclR helix-turn-helix domain protein; [K] COG1846 Transcriptional regulators. (111 aa)
AOF98289.1Bacterial regulatory helix-turn-helix, lysR family protein; [K] COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (311 aa)
AOF95888.1Bacterial regulatory helix-turn-helix, lysR family protein; [K] COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (302 aa)
AOF95900.1Hypothetical protein. (170 aa)
AOF98135.1Bacterial regulatory s, luxR family protein; [K] COG2771 DNA-binding HTH domain-containing proteins. (250 aa)
AOF97012.1sigma70-ECF: RNA polymerase sigma factor, sigma-70 family protein; [K] COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog. (178 aa)
BSY17_369Ferric uptake regulator family protein; [P] COG0735 Fe2+/Zn2+ uptake regulation proteins; Belongs to the Fur family. (155 aa)
BSY17_387Hypothetical protein; Transcriptional regulatory, C terminal family protein; [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain. (221 aa)
BSY17_4Bacterial regulatory s, gntR family protein; [K] COG1802 Transcriptional regulators. (207 aa)
rpoDRNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. (685 aa)
BSY17_479Bacterial regulatory s, luxR family protein; [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain. (307 aa)
BSY17_484Bacterial regulatory s, luxR family protein; [K] COG2771 DNA-binding HTH domain-containing proteins. (152 aa)
BSY17_531Bacterial regulatory helix-turn-helix, lysR family protein; [K] COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (307 aa)
BSY17_542Bacterial regulatory helix-turn-helix, lysR family protein; [K] COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (302 aa)
BSY17_554Bacterial regulatory s, luxR family protein; [K] COG2771 DNA-binding HTH domain-containing proteins. (326 aa)
BSY17_581Bacterial regulatory helix-turn-helix, lysR family protein; [K] COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (297 aa)
BSY17_594Bacterial regulatory helix-turn-helix, lysR family protein; [K] COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (307 aa)
BSY17_677luxR-family transcriptional regulator; [K] COG2771 DNA-binding HTH domain-containing proteins. (362 aa)
BSY17_714Transcriptional regulator PadR-like family protein; [K] COG1695 Predicted transcriptional regulators. (205 aa)
hrcAHeat-inducible transcription repressor HrcA; Negative regulator of class I heat shock genes (grpE-dnaK- dnaJ and groELS operons). Prevents heat-shock induction of these operons. (348 aa)
BSY17_738SCP-2 sterol transfer family protein; [K] COG1733 Predicted transcriptional regulators. (225 aa)
BSY17_739hxlR-like helix-turn-helix family protein; [K] COG1733 Predicted transcriptional regulators. (137 aa)
BSY17_755Hypothetical protein; Transcriptional regulatory, C terminal family protein; [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain. (235 aa)
AOF96770.1Bacterial regulatory s, gntR family protein; [K] COG1802 Transcriptional regulators. (220 aa)
BSY17_867Hypothetical protein; Transcriptional regulatory, C terminal family protein; [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain. (239 aa)
BSY17_873Bacterial regulatory helix-turn-helix, lysR family protein; [K] COG0583 Transcriptional regulator. (310 aa)
BSY17_91Bacterial regulatory helix-turn-helix, lysR family protein; [K] COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (333 aa)
BSY17_912Hypothetical protein; Transcriptional regulatory, C terminal family protein; [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain. (238 aa)
BSY17_938Winged helix DNA-binding domain protein; [K] COG1846 Transcriptional regulators. (181 aa)
BSY17_960sigma70-ECF: RNA polymerase sigma factor, sigma-70 family protein; [K] COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog. (166 aa)
BSY17_969Winged helix DNA-binding domain protein; [K] COG1846 Transcriptional regulators. (177 aa)
BSY17_98Bacterial regulatory s, gntR family protein; [K] COG1802 Transcriptional regulators. (246 aa)
BSY17_980Hypothetical protein; Transcriptional regulatory, C terminal family protein; [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain. (240 aa)
BSY17_983SIS domain protein; [K] COG1737 Transcriptional regulators. (298 aa)
BSY17_990Bacterial regulatory, arsR family protein; [K] COG0640 Predicted transcriptional regulators. (128 aa)
AOF98400.1Bacterial regulatory helix-turn-helix, lysR family protein; [K] COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (300 aa)
AOF95568.1[T] COG3707 Response regulator with putative antiterminator output domain. (193 aa)
AOF96404.1Bacterial regulatory s, gntR family protein; [K] COG2186 Transcriptional regulators. (254 aa)
AOF96806.1Bacterial regulatory, arsR family protein; [K] COG0640 Predicted transcriptional regulators. (117 aa)
BSY17_111Bacterial regulatory helix-turn-helix, lysR family protein; [K] COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (320 aa)
BSY17_112Bacterial regulatory helix-turn-helix, lysR family protein; [K] COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (302 aa)
AOF97972.1Hypothetical protein. (99 aa)
AOF96116.1Winged helix DNA-binding domain protein; [K] COG1846 Transcriptional regulators. (164 aa)
AOF97198.1Transposase family protein; [L] COG2963 Transposase and inactivated derivatives. (109 aa)
BSY17_123asnC-type helix-turn-helix domain protein; [K] COG1522 Transcriptional regulators. (157 aa)
AOF96424.1Bacterial regulatory s, gntR family protein; [KE] COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs. (487 aa)
BSY17_142Rrf2_super: Rrf2 family protein; [K] COG1959 Predicted transcriptional regulator. (157 aa)
AOF96663.1ftsK/SpoIIIE family protein; [D] COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins. (776 aa)
ruvBHolliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. (340 aa)
AOF97762.1Winged helix DNA-binding domain protein; [K] COG1846 Transcriptional regulators. (150 aa)
AOF97940.1Bacterial regulatory helix-turn-helix, lysR family protein; [K] COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (281 aa)
AOF98154.1Sensory box protein; [T] COG2202 FOG: PAS/PAC domain. (195 aa)
AOF96352.1Rrf2_super: Rrf2 family protein; [K] COG1959 Predicted transcriptional regulator. (136 aa)
recQrecQ: ATP-dependent DNA helicase RecQ; [L] COG0514 Superfamily II DNA helicase. (590 aa)
AOF97161.1Winged helix DNA-binding domain protein. (330 aa)
AOF97260.1Rrf2_super: Rrf2 family protein; [K] COG1959 Predicted transcriptional regulator. (142 aa)
AOF95850.1marR family protein; [T] COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases. (243 aa)
AOF97043.1Bacterial regulatory s, luxR family protein; [T] COG4566 Response regulator. (207 aa)
AOF95593.1Bacterial regulatory s, crp family protein; [T] COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases. (245 aa)
AOF95554.1Methyltransferase domain protein; [QR] COG0500 SAM-dependent methyltransferases. (323 aa)
AOF96889.1Penicillinase repressor family protein; [K] COG3682 Predicted transcriptional regulator. (125 aa)
AOF95854.1Bacterial regulatory s, gntR family protein; [K] COG2186 Transcriptional regulators. (244 aa)
AOF96204.1Bacterial regulatory helix-turn-helix, lysR family protein; [K] COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (410 aa)
AOF97234.1Ogt: methylated-DNA--[]-cysteine S-methyltransferase family protein; [F] COG2169 Adenosine deaminase. (372 aa)
phoBphoB: phosphate regulon transcriptional regulatory protein PhoB; [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain. (233 aa)
dprAdprA: DNA protecting protein DprA; [LU] COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake. (360 aa)
AOF96837.1Metallo-beta-lactamase superfamily protein; [R] COG0491 Zn-dependent hydrolases, including glyoxylases. (294 aa)
AOF95531.1hxlR-like helix-turn-helix family protein; [K] COG1733 Predicted transcriptional regulators. (162 aa)
AOF97329.1Hypothetical protein; Transcriptional regulatory, C terminal family protein; [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain. (242 aa)
AOF95480.1Hypothetical protein; Transcriptional regulatory, C terminal family protein; [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain. (236 aa)
scpBSegregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves. (196 aa)
AOF96205.1Winged helix DNA-binding domain protein; [K] COG1846 Transcriptional regulators. (170 aa)
AOF96581.1Bacterial regulatory s, gntR family protein; [K] COG2186 Transcriptional regulators. (244 aa)
AOF98228.1sigma70-ECF: RNA polymerase sigma factor, sigma-70 family protein; [K] COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog. (180 aa)
AOF95576.1Bacterial regulatory helix-turn-helix, lysR family protein; [K] COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (263 aa)
AOF96851.1sigma70-ECF: RNA polymerase sigma factor, sigma-70 family protein; [K] COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog. (199 aa)
AOF95647.1Bacterial regulatory s, luxR family protein; [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain. (189 aa)
AOF98139.1sigma70-ECF: RNA polymerase sigma factor, sigma-70 family protein; [K] COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog. (216 aa)
AOF97863.1Bacterial regulatory s, gntR family protein; [K] COG1725 Predicted transcriptional regulators. (114 aa)
Your Current Organism:
Sphingobium sp. RAC03
NCBI taxonomy Id: 1843368
Other names: S. sp. RAC03
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