STRINGSTRING
BSY17_103 BSY17_103 BSY17_104 BSY17_104 AOF97327.1 AOF97327.1 phaC phaC AOF96131.1 AOF96131.1 AOF95941.1 AOF95941.1 AOF96265.1 AOF96265.1 AOF98435.1 AOF98435.1 phaZ phaZ ilvN ilvN ilvB ilvB BSY17_262 BSY17_262 BSY17_263 BSY17_263 AOF96171.1 AOF96171.1 AOF96672.1 AOF96672.1 AOF98323.1 AOF98323.1 AOF97730.1 AOF97730.1 phbB phbB sdhA sdhA sdhD sdhD sdhC sdhC
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
BSY17_103pcaJ_scoB_fam: 3-oxoacid CoA-transferase, B subunit; [I] COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit. (221 aa)
BSY17_104pcaI_scoA_fam: 3-oxoacid CoA-transferase, A subunit; [I] COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit. (235 aa)
AOF97327.13-hydroxyacyl-CoA dehydrogenase, NAD binding domain protein; [I] COG1250 3-hydroxyacyl-CoA dehydrogenase. (292 aa)
phaCPHA_synth_I: poly(R)-hydroxyalkanoic acid synthase, class I family protein; [I] COG3243 Poly(3-hydroxyalkanoate) synthetase. (579 aa)
AOF96131.1PHB_DH: 3-hydroxybutyrate dehydrogenase family protein; [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases). (263 aa)
AOF95941.1pcaI_scoA_fam: 3-oxoacid CoA-transferase, A subunit; [I] COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit. (236 aa)
AOF96265.1pcaJ_scoB_fam: 3-oxoacid CoA-transferase, B subunit; [I] COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit. (211 aa)
AOF98435.1dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur family protein; [C] COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit. (262 aa)
phaZPHB_depoly_PhaZ: polyhydroxyalkanoate depolymerase, intracellular family protein; [I] COG4553 Poly-beta-hydroxyalkanoate depolymerase. (407 aa)
ilvNAcolac_sm: acetolactate synthase, small subunit; [E] COG0440 Acetolactate synthase, small (regulatory) subunit. (171 aa)
ilvBAcolac_lg: acetolactate synthase, large subunit, biosynthetic type; [EH] COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]. (583 aa)
BSY17_262Alpha/beta hydrolase family protein; [I] COG3243 Poly(3-hydroxyalkanoate) synthetase. (294 aa)
BSY17_263acCoA-C-Actrans: acetyl-CoA C-acyltransferase family protein; [I] COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (390 aa)
AOF96171.1enoyl-CoA hydratase/isomerase family protein; [I] COG1250 3-hydroxyacyl-CoA dehydrogenase. (725 aa)
AOF96672.1acCoA-C-Actrans: acetyl-CoA C-acyltransferase family protein; [I] COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (402 aa)
AOF98323.1enoyl-CoA hydratase/isomerase family protein; [I] COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family. (258 aa)
AOF97730.1enoyl-CoA hydratase/isomerase family protein; [I] COG1024 Enoyl-CoA hydratase/carnithine racemase. (352 aa)
phbBacAcCoA_reduct: acetoacetyl-CoA reductase family protein; [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases). (240 aa)
sdhAsdhA_forward: succinate dehydrogenase, flavoprotein subunit; [C] COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily. (600 aa)
sdhDSucc_dehyd_anc: succinate dehydrogenase, hydrophobic membrane anchor protein; [C] COG2142 Succinate dehydrogenase, hydrophobic anchor subunit. (129 aa)
sdhCsucc_dehyd_cytB: succinate dehydrogenase, cytochrome b556 subunit; [C] COG2009 Succinate dehydrogenase/fumarate reductase, cytochrome b subunit. (110 aa)
Your Current Organism:
Sphingobium sp. RAC03
NCBI taxonomy Id: 1843368
Other names: S. sp. RAC03
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