STRINGSTRING
OAG67443.1 OAG67443.1 OAG69356.1 OAG69356.1 OAG68148.1 OAG68148.1 OAG67999.1 OAG67999.1 rpoB rpoB rpoC rpoC rpoA rpoA OAG66763.1 OAG66763.1 OAG66787.1 OAG66787.1 OAG66926.1 OAG66926.1 OAG66936.1 OAG66936.1 rpoZ rpoZ fliA fliA OAG65608.1 OAG65608.1 OAG65666.1 OAG65666.1 nadE nadE OAG69130.1 OAG69130.1 OAG69070.1 OAG69070.1 OAG68879.1 OAG68879.1 rpoD rpoD dnaG dnaG OAG68387.1 OAG68387.1 OAG68325.1 OAG68325.1 OAG68343.1 OAG68343.1 OAG68200.1 OAG68200.1 OAG67417.1 OAG67417.1 OAG67442.1 OAG67442.1 OAG66488.1 OAG66488.1 OAG66123.1 OAG66123.1 OAG66127.1 OAG66127.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
OAG67443.1RNA polymerase subunit sigma; Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (187 aa)
OAG69356.1RNA polymerase factor sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (477 aa)
OAG68148.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (160 aa)
OAG67999.1RNA polymerase sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (186 aa)
rpoBDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1383 aa)
rpoCDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1405 aa)
rpoADNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (332 aa)
OAG66763.1Anti-sigma regulatory factor; Derived by automated computational analysis using gene prediction method: Protein Homology. (131 aa)
OAG66787.1RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (397 aa)
OAG66926.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (488 aa)
OAG66936.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (169 aa)
rpoZDNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. (99 aa)
fliARNA polymerase sigma factor FliA; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes; Belongs to the sigma-70 factor family. FliA subfamily. (255 aa)
OAG65608.1RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (467 aa)
OAG65666.1Nitrate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (354 aa)
nadENAD+ synthase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source. (546 aa)
OAG69130.1Anti-sigma F factor; Derived by automated computational analysis using gene prediction method: Protein Homology. (143 aa)
OAG69070.1RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (176 aa)
OAG68879.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0758 family. (228 aa)
rpoDRNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. (624 aa)
dnaGDNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. (584 aa)
OAG68387.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (191 aa)
OAG68325.1RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (193 aa)
OAG68343.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (410 aa)
OAG68200.1RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. (179 aa)
OAG67417.1RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (196 aa)
OAG67442.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (274 aa)
OAG66488.1Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (103 aa)
OAG66123.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0145 family. (127 aa)
OAG66127.1Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (74 aa)
Your Current Organism:
Xanthomonas floridensis
NCBI taxonomy Id: 1843580
Other names: ATCC TSD-60, ICMP 21312, LMG 29665, LMG:29665, NCPPB 4601, X. floridensis, Xanthomonas floridensis Vicente et al. 2017, Xanthomonas sp. WHRI 8848, strain WHRI 8848
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