17 items (Xanthomonas floridensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

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Your Input:
	rhlB	ATP-dependent RNA helicase RhlB; DEAD-box RNA helicase involved in RNA degradation. Has RNA- dependent ATPase activity and unwinds double-stranded RNA. Belongs to the DEAD box helicase family. RhlB subfamily. (572 aa)
	OAG69526.1	Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (663 aa)
	OAG69491.1	ATP-dependent DNA helicase RecQ; Derived by automated computational analysis using gene prediction method: Protein Homology. (600 aa)
	OAG66930.1	ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (975 aa)
	OAG66310.1	RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DEAD box helicase family. (462 aa)
	recG	ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. (713 aa)
	OAG65761.1	ATP-dependent DNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1464 aa)
	OAG65790.1	ATP-dependent RNA helicase DbpA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DEAD box helicase family. (458 aa)
	dinG	ATP-dependent DNA helicase DinG; DNA-dependent ATPase and 5'-3' DNA helicase. (711 aa)
	OAG68969.1	RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DEAD box helicase family. (425 aa)
	uvrB	Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] (673 aa)
	priA	Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (740 aa)
	mfd	Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. (1155 aa)
	deaD	RNA helicase; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. (633 aa)
	OAG67400.1	DNA ligase-associated DEXH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (833 aa)
	OAG67048.1	ATP-dependent helicase HrpB; Derived by automated computational analysis using gene prediction method: Protein Homology. (833 aa)
	OAG66702.1	Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (831 aa)

Your Current Organism:

Xanthomonas floridensis

NCBI taxonomy Id: 1843580
Other names: ATCC TSD-60, ICMP 21312, LMG 29665, LMG:29665, NCPPB 4601, X. floridensis, Xanthomonas floridensis Vicente et al. 2017, Xanthomonas sp. WHRI 8848, strain WHRI 8848

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OAG65790.1	OAG66930.1	A7D17_07010	A7D17_04220	ATP-dependent RNA helicase DbpA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DEAD box helicase family.	ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.784
OAG65790.1	OAG67048.1	A7D17_07010	A7D17_19440	ATP-dependent RNA helicase DbpA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DEAD box helicase family.	ATP-dependent helicase HrpB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.861
OAG65790.1	OAG69491.1	A7D17_07010	A7D17_01400	ATP-dependent RNA helicase DbpA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DEAD box helicase family.	ATP-dependent DNA helicase RecQ; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.447
OAG66310.1	OAG66930.1	A7D17_05135	A7D17_04220	RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DEAD box helicase family.	ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.784
OAG66310.1	OAG67048.1	A7D17_05135	A7D17_19440	RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DEAD box helicase family.	ATP-dependent helicase HrpB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.911
OAG66310.1	OAG68969.1	A7D17_05135	A7D17_11570	RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DEAD box helicase family.	RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DEAD box helicase family.	0.875
OAG66310.1	OAG69491.1	A7D17_05135	A7D17_01400	RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DEAD box helicase family.	ATP-dependent DNA helicase RecQ; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.463
OAG66930.1	OAG65790.1	A7D17_04220	A7D17_07010	ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-dependent RNA helicase DbpA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DEAD box helicase family.	0.784
OAG66930.1	OAG66310.1	A7D17_04220	A7D17_05135	ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DEAD box helicase family.	0.784
OAG66930.1	OAG68969.1	A7D17_04220	A7D17_11570	ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DEAD box helicase family.	0.784
OAG66930.1	OAG69491.1	A7D17_04220	A7D17_01400	ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-dependent DNA helicase RecQ; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.863
OAG66930.1	OAG69526.1	A7D17_04220	A7D17_01315	ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.827
OAG66930.1	deaD	A7D17_04220	A7D17_14040	ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA helicase; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.	0.784
OAG66930.1	dinG	A7D17_04220	A7D17_10575	ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-dependent DNA helicase DinG; DNA-dependent ATPase and 5'-3' DNA helicase.	0.803
OAG66930.1	rhlB	A7D17_04220	A7D17_13485	ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-dependent RNA helicase RhlB; DEAD-box RNA helicase involved in RNA degradation. Has RNA- dependent ATPase activity and unwinds double-stranded RNA. Belongs to the DEAD box helicase family. RhlB subfamily.	0.784
OAG67048.1	OAG65790.1	A7D17_19440	A7D17_07010	ATP-dependent helicase HrpB; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-dependent RNA helicase DbpA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DEAD box helicase family.	0.861
OAG67048.1	OAG66310.1	A7D17_19440	A7D17_05135	ATP-dependent helicase HrpB; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DEAD box helicase family.	0.911
OAG67048.1	OAG68969.1	A7D17_19440	A7D17_11570	ATP-dependent helicase HrpB; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DEAD box helicase family.	0.911
OAG67048.1	deaD	A7D17_19440	A7D17_14040	ATP-dependent helicase HrpB; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA helicase; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.	0.861
OAG67048.1	rhlB	A7D17_19440	A7D17_13485	ATP-dependent helicase HrpB; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-dependent RNA helicase RhlB; DEAD-box RNA helicase involved in RNA degradation. Has RNA- dependent ATPase activity and unwinds double-stranded RNA. Belongs to the DEAD box helicase family. RhlB subfamily.	0.903

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