41 items (Nocardioides luteus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	OIJ27788.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (577 aa)
	OIJ24236.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (885 aa)
	OIJ24181.1	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (361 aa)
	OIJ24083.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (225 aa)
	OIJ23872.1	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (486 aa)
	OIJ23793.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (534 aa)
	OIJ23578.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (413 aa)
	OIJ23654.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (412 aa)
	OIJ24258.1	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (493 aa)
	OIJ24423.1	DNA topoisomerase IV subunit B; Derived by automated computational analysis using gene prediction method: Protein Homology. (694 aa)
	OIJ24719.1	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (471 aa)
	OIJ24879.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (391 aa)
	OIJ24836.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1101 aa)
	OIJ24916.1	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (385 aa)
	OIJ25097.1	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (477 aa)
	OIJ25140.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (530 aa)
	gyrB	DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (687 aa)
	OIJ25328.1	Sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (371 aa)
	OIJ25553.1	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (369 aa)
	OIJ25584.1	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (391 aa)
	OIJ25714.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (528 aa)
	OIJ26344.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (555 aa)
	OIJ26555.1	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (474 aa)
	OIJ26576.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (408 aa)
	OIJ26765.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (445 aa)
	OIJ26920.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (844 aa)
	OIJ27157.1	PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (346 aa)
	OIJ27278.1	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (383 aa)
	OIJ27485.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (307 aa)
	OIJ27705.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (443 aa)
	OIJ27634.1	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (568 aa)
	OIJ27803.1	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (314 aa)
	OIJ23760.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (355 aa)
	OIJ23689.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (290 aa)
	UG56_026615	Hybrid sensor histidine kinase/response regulator; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (707 aa)
	OIJ23748.1	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (538 aa)
	OIJ28494.1	PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (505 aa)
	OIJ28156.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (394 aa)
	OIJ27933.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (564 aa)
	OIJ27790.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (592 aa)
	OIJ27789.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (604 aa)

Your Current Organism:

Nocardioides luteus

NCBI taxonomy Id: 1844
Other names: ATCC 43052, CCUG 37986, CIP 103450, DSM 43366, IFO 14491, IMET 7830, JCM 3358, KCTC 9575, LMG 16209, LMG:16209, N. luteus, NBRC 14491

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OIJ23578.1	OIJ28494.1	UG56_027205	UG56_001550	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.488
OIJ23654.1	OIJ23760.1	UG56_026770	UG56_026185	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.726
OIJ23654.1	OIJ25553.1	UG56_026770	UG56_017315	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.729
OIJ23654.1	OIJ28156.1	UG56_026770	UG56_003625	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.757
OIJ23654.1	OIJ28494.1	UG56_026770	UG56_001550	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.488
OIJ23689.1	OIJ23872.1	UG56_026660	UG56_025755	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.439
OIJ23689.1	OIJ24916.1	UG56_026660	UG56_020085	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.446
OIJ23689.1	OIJ25097.1	UG56_026660	UG56_019485	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.502
OIJ23689.1	OIJ26765.1	UG56_026660	UG56_011025	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.670
OIJ23689.1	OIJ27788.1	UG56_026660	UG56_005360	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.401
OIJ23689.1	OIJ27790.1	UG56_026660	UG56_005370	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.439
OIJ23689.1	OIJ28494.1	UG56_026660	UG56_001550	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.931
OIJ23748.1	OIJ24236.1	UG56_026350	UG56_023845	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.639
OIJ23748.1	OIJ24916.1	UG56_026350	UG56_020085	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.402
OIJ23748.1	OIJ27788.1	UG56_026350	UG56_005360	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.429
OIJ23748.1	OIJ27790.1	UG56_026350	UG56_005370	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.408
OIJ23748.1	OIJ28494.1	UG56_026350	UG56_001550	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.920
OIJ23760.1	OIJ23654.1	UG56_026185	UG56_026770	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.726
OIJ23760.1	OIJ25584.1	UG56_026185	UG56_017195	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.746
OIJ23760.1	OIJ26576.1	UG56_026185	UG56_011425	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.747

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