60 items (Nocardioides luteus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	UG56_026615	Hybrid sensor histidine kinase/response regulator; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (707 aa)
	OIJ23748.1	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (538 aa)
	OIJ23760.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (355 aa)
	OIJ23793.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (534 aa)
	OIJ26920.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (844 aa)
	OIJ23872.1	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (486 aa)
	OIJ23987.1	Sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (315 aa)
	OIJ24032.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (414 aa)
	OIJ24039.1	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (396 aa)
	OIJ24083.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (225 aa)
	OIJ24181.1	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (361 aa)
	OIJ25444.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (390 aa)
	OIJ25328.1	Sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (371 aa)
	gyrB	DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (687 aa)
	OIJ25140.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (530 aa)
	OIJ26765.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (445 aa)
	OIJ25131.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (454 aa)
	OIJ24719.1	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (471 aa)
	OIJ24771.1	TIGR02391 family protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (527 aa)
	OIJ24766.1	Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1581 aa)
	OIJ24879.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (391 aa)
	OIJ24836.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1101 aa)
	OIJ24916.1	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (385 aa)
	OIJ28494.1	PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (505 aa)
	OIJ28502.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (395 aa)
	OIJ28156.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (394 aa)
	OIJ27933.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (564 aa)
	OIJ26566.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (389 aa)
	OIJ26576.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (408 aa)
	OIJ26555.1	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (474 aa)
	OIJ23578.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (413 aa)
	OIJ24236.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (885 aa)
	OIJ26344.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (555 aa)
	OIJ26381.1	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (379 aa)
	OIJ25844.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (391 aa)
	OIJ25102.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (424 aa)
	OIJ25097.1	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (477 aa)
	OIJ27967.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (360 aa)
	OIJ27788.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (577 aa)
	OIJ27789.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (604 aa)
	OIJ27790.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (592 aa)
	OIJ27902.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (372 aa)
	OIJ27803.1	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (314 aa)
	OIJ27634.1	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (568 aa)
	OIJ25714.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (528 aa)
	OIJ25584.1	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (391 aa)
	OIJ25553.1	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (369 aa)
	OIJ24423.1	DNA topoisomerase IV subunit B; Derived by automated computational analysis using gene prediction method: Protein Homology. (694 aa)
	OIJ24217.1	Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology. (126 aa)
	OIJ27705.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (443 aa)
	OIJ24258.1	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (493 aa)
	OIJ24503.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (384 aa)
	OIJ27278.1	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (383 aa)
	OIJ27157.1	PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (346 aa)
	OIJ26981.1	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (436 aa)
	OIJ23596.1	Sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (455 aa)
	OIJ23665.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (301 aa)
	OIJ23654.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (412 aa)
	OIJ23689.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (290 aa)
	OIJ27485.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (307 aa)

Your Current Organism:

Nocardioides luteus

NCBI taxonomy Id: 1844
Other names: ATCC 43052, CCUG 37986, CIP 103450, DSM 43366, IFO 14491, IMET 7830, JCM 3358, KCTC 9575, LMG 16209, LMG:16209, N. luteus, NBRC 14491

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OIJ23578.1	OIJ23987.1	UG56_027205	UG56_025210	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.412
OIJ23578.1	OIJ25102.1	UG56_027205	UG56_019510	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.419
OIJ23578.1	OIJ28494.1	UG56_027205	UG56_001550	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.488
OIJ23596.1	OIJ26566.1	UG56_027150	UG56_011365	Sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.417
OIJ23596.1	OIJ28494.1	UG56_027150	UG56_001550	Sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.488
OIJ23596.1	OIJ28502.1	UG56_027150	UG56_001605	Sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.522
OIJ23654.1	OIJ23665.1	UG56_026770	UG56_026785	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.617
OIJ23654.1	OIJ23760.1	UG56_026770	UG56_026185	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.726
OIJ23654.1	OIJ23987.1	UG56_026770	UG56_025210	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.408
OIJ23654.1	OIJ24503.1	UG56_026770	UG56_022685	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.649
OIJ23654.1	OIJ25102.1	UG56_026770	UG56_019510	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.415
OIJ23654.1	OIJ25131.1	UG56_026770	UG56_019425	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.747
OIJ23654.1	OIJ25444.1	UG56_026770	UG56_017750	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.449
OIJ23654.1	OIJ25553.1	UG56_026770	UG56_017315	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.729
OIJ23654.1	OIJ26566.1	UG56_026770	UG56_011365	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.552
OIJ23654.1	OIJ27967.1	UG56_026770	UG56_004490	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.655
OIJ23654.1	OIJ28156.1	UG56_026770	UG56_003625	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.757
OIJ23654.1	OIJ28494.1	UG56_026770	UG56_001550	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.488
OIJ23665.1	OIJ23654.1	UG56_026785	UG56_026770	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.617
OIJ23665.1	OIJ23987.1	UG56_026785	UG56_025210	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.580

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