(14 nodes) Positive regulation of response to external stimulus network (Coleophoma cylindrospora)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BP6252_00923	RWD-domain-containing protein. (232 aa)
	BP6252_04593	Putative beta-1,3-glucan-binding protein. (461 aa)
	BP6252_04815	Putative NIMA-like protein kinase. (729 aa)
	BP6252_00379	GH16 domain-containing protein. (468 aa)
	BP6252_01585	Putative GTP-binding protein-2. (371 aa)
	BP6252_01657	Putative cpc-3 protein. (1607 aa)
	BP6252_13959	Uncharacterized protein. (478 aa)
	BP6252_12303	Opy2 domain-containing protein. (404 aa)
	BP6252_10632	Stress responsive a b barrel protein. (125 aa)
	BP6252_09946	BZIP domain-containing protein. (550 aa)
	BP6252_07730	Developmentally regulated GTP-binding protein. (367 aa)
	BP6252_06758	Uncharacterized protein. (478 aa)
	BP6252_06952	Nitrogen permease regulator 2. (536 aa)
	BP6252_05386	Two-component osmosensing histidine kinase BOS1p. (1313 aa)

Your Current Organism:

Coleophoma cylindrospora

NCBI taxonomy Id: 1849047
Other names: C. cylindrospora, Coleophoma sp. CBS 449.70, Macrophoma cylindrospora, Phoma cylindrospora, Sphaeropsis cylindrospora

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BP6252_00923	BP6252_01585	A0A3D8SRT7	A0A3D8ST97	RWD-domain-containing protein.	Putative GTP-binding protein-2.	0.977
BP6252_00923	BP6252_07730	A0A3D8SRT7	A0A3D8RAT7	RWD-domain-containing protein.	Developmentally regulated GTP-binding protein.	0.877
BP6252_01585	BP6252_00923	A0A3D8ST97	A0A3D8SRT7	Putative GTP-binding protein-2.	RWD-domain-containing protein.	0.977
BP6252_01585	BP6252_07730	A0A3D8ST97	A0A3D8RAT7	Putative GTP-binding protein-2.	Developmentally regulated GTP-binding protein.	0.758
BP6252_01657	BP6252_09946	A0A3D8STK7	A0A3D8QX94	Putative cpc-3 protein.	BZIP domain-containing protein.	0.708
BP6252_06758	BP6252_13959	A0A3D8RG60	A0A3D8Q4K7	Uncharacterized protein.	Uncharacterized protein.	0.584
BP6252_07730	BP6252_00923	A0A3D8RAT7	A0A3D8SRT7	Developmentally regulated GTP-binding protein.	RWD-domain-containing protein.	0.877
BP6252_07730	BP6252_01585	A0A3D8RAT7	A0A3D8ST97	Developmentally regulated GTP-binding protein.	Putative GTP-binding protein-2.	0.758
BP6252_09946	BP6252_01657	A0A3D8QX94	A0A3D8STK7	BZIP domain-containing protein.	Putative cpc-3 protein.	0.708
BP6252_13959	BP6252_06758	A0A3D8Q4K7	A0A3D8RG60	Uncharacterized protein.	Uncharacterized protein.	0.584