(19 nodes) Epithelium development network (Coleophoma cylindrospora)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BP6252_13915	Uncharacterized protein; Belongs to the cytochrome P450 family. (502 aa)
	BP6252_03910	Zn(2)-C6 fungal-type domain-containing protein. (995 aa)
	BP6252_03650	Uncharacterized protein. (641 aa)
	BP6252_03847	Uncharacterized protein. (773 aa)
	BP6252_03375	Uncharacterized protein. (992 aa)
	BP6252_04374	Uncharacterized protein. (519 aa)
	BP6252_04164	Uncharacterized protein; Belongs to the cytochrome P450 family. (505 aa)
	BP6252_09566	Uncharacterized protein. (182 aa)
	BP6252_09119	Uncharacterized protein. (753 aa)
	BP6252_09615	Uncharacterized protein. (205 aa)
	BP6252_10633	Zn(2)-C6 fungal-type domain-containing protein. (748 aa)
	BP6252_11673	Uncharacterized protein. (663 aa)
	BP6252_11374	Uncharacterized protein. (638 aa)
	BP6252_12338	Uncharacterized protein. (146 aa)
	BP6252_12088	Uncharacterized protein. (996 aa)
	BP6252_11969	Uncharacterized protein. (662 aa)
	BP6252_12924	Uncharacterized protein. (217 aa)
	BP6252_00187	Zn(2)-C6 fungal-type domain-containing protein. (569 aa)
	BP6252_02288	Uncharacterized protein. (2205 aa)

Your Current Organism:

Coleophoma cylindrospora

NCBI taxonomy Id: 1849047
Other names: C. cylindrospora, Coleophoma sp. CBS 449.70, Macrophoma cylindrospora, Phoma cylindrospora, Sphaeropsis cylindrospora

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BP6252_00187	BP6252_03847	A0A3D8SPA7	A0A3D8S8Q0	Zn(2)-C6 fungal-type domain-containing protein.	Uncharacterized protein.	0.520
BP6252_00187	BP6252_04374	A0A3D8SPA7	A0A3D8S0C7	Zn(2)-C6 fungal-type domain-containing protein.	Uncharacterized protein.	0.520
BP6252_02288	BP6252_11969	A0A3D8SG08	A0A3D8QFF2	Uncharacterized protein.	Uncharacterized protein.	0.432
BP6252_03847	BP6252_00187	A0A3D8S8Q0	A0A3D8SPA7	Uncharacterized protein.	Zn(2)-C6 fungal-type domain-containing protein.	0.520
BP6252_03847	BP6252_03910	A0A3D8S8Q0	A0A3D8SAH4	Uncharacterized protein.	Zn(2)-C6 fungal-type domain-containing protein.	0.520
BP6252_03847	BP6252_10633	A0A3D8S8Q0	A0A3D8QT82	Uncharacterized protein.	Zn(2)-C6 fungal-type domain-containing protein.	0.520
BP6252_03910	BP6252_03847	A0A3D8SAH4	A0A3D8S8Q0	Zn(2)-C6 fungal-type domain-containing protein.	Uncharacterized protein.	0.520
BP6252_03910	BP6252_04374	A0A3D8SAH4	A0A3D8S0C7	Zn(2)-C6 fungal-type domain-containing protein.	Uncharacterized protein.	0.520
BP6252_04374	BP6252_00187	A0A3D8S0C7	A0A3D8SPA7	Uncharacterized protein.	Zn(2)-C6 fungal-type domain-containing protein.	0.520
BP6252_04374	BP6252_03910	A0A3D8S0C7	A0A3D8SAH4	Uncharacterized protein.	Zn(2)-C6 fungal-type domain-containing protein.	0.520
BP6252_04374	BP6252_10633	A0A3D8S0C7	A0A3D8QT82	Uncharacterized protein.	Zn(2)-C6 fungal-type domain-containing protein.	0.520
BP6252_10633	BP6252_03847	A0A3D8QT82	A0A3D8S8Q0	Zn(2)-C6 fungal-type domain-containing protein.	Uncharacterized protein.	0.520
BP6252_10633	BP6252_04374	A0A3D8QT82	A0A3D8S0C7	Zn(2)-C6 fungal-type domain-containing protein.	Uncharacterized protein.	0.520
BP6252_11969	BP6252_02288	A0A3D8QFF2	A0A3D8SG08	Uncharacterized protein.	Uncharacterized protein.	0.432