(32 nodes) SAGA-type complex network (Coleophoma cylindrospora)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BP6252_02781	Uncharacterized protein. (390 aa)
	BP6252_01282	Uncharacterized protein. (311 aa)
	BP6252_00375	Histone-fold containing protein. (463 aa)
	BP6252_00073	Uncharacterized protein. (327 aa)
	BP6252_03006	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (3862 aa)
	BP6252_04889	Uncharacterized protein. (354 aa)
	BP6252_04771	Uncharacterized protein. (434 aa)
	BP6252_04162	Uncharacterized protein. (315 aa)
	BP6252_05821	Uncharacterized protein. (383 aa)
	BP6252_05866	Uncharacterized protein. (352 aa)
	BP6252_06409	Uncharacterized protein. (121 aa)
	BP6252_06124	Uncharacterized protein. (963 aa)
	BP6252_07111	TFIID-domain-containing protein. (246 aa)
	BP6252_06958	Uncharacterized protein. (514 aa)
	BP6252_06962	Uncharacterized protein. (670 aa)
	BP6252_06725	Uncharacterized protein. (399 aa)
	BP6252_08179	SGF29 C-terminal domain-containing protein. (436 aa)
	BP6252_09439	SCA7 domain-containing protein. (177 aa)
	BP6252_09431	TFIID_20kDa domain-containing protein. (634 aa)
	BP6252_09388	Bromo domain-containing protein. (1135 aa)
	BP6252_09291	Ubiquitin carboxyl-terminal hydrolase. (514 aa)
	BP6252_09716	Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...] (206 aa)
	BP6252_10320	Uncharacterized protein. (235 aa)
	BP6252_11152	Uncharacterized protein. (254 aa)
	BP6252_11704	WD40 repeat-like protein. (667 aa)
	BP6252_11609	SWIRM domain-containing protein. (387 aa)
	BP6252_12431	Uncharacterized protein. (639 aa)
	BP6252_13040	Uncharacterized protein. (231 aa)
	BP6252_12569	SCA7 domain-containing protein. (447 aa)
	BP6252_13619	Uncharacterized protein. (277 aa)
	BP6252_13415	Uncharacterized protein. (451 aa)
	BP6252_13561	Transcriptional adapter 2; Functions as component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA and ADA. SAGA is involved in RNA polymerase II-dependent transcriptional regulation. (591 aa)

Your Current Organism:

Coleophoma cylindrospora

NCBI taxonomy Id: 1849047
Other names: C. cylindrospora, Coleophoma sp. CBS 449.70, Macrophoma cylindrospora, Phoma cylindrospora, Sphaeropsis cylindrospora

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BP6252_00073	BP6252_00375	A0A3D8SPD9	A0A3D8SPU7	Uncharacterized protein.	Histone-fold containing protein.	0.678
BP6252_00073	BP6252_03006	A0A3D8SPD9	A0A3D8S775	Uncharacterized protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.816
BP6252_00073	BP6252_04162	A0A3D8SPD9	A0A3D8S0A1	Uncharacterized protein.	Uncharacterized protein.	0.705
BP6252_00073	BP6252_04771	A0A3D8SPD9	A0A3D8S1E4	Uncharacterized protein.	Uncharacterized protein.	0.577
BP6252_00073	BP6252_06962	A0A3D8SPD9	A0A3D8RG74	Uncharacterized protein.	Uncharacterized protein.	0.818
BP6252_00073	BP6252_07111	A0A3D8SPD9	A0A3D8RH38	Uncharacterized protein.	TFIID-domain-containing protein.	0.814
BP6252_00073	BP6252_08179	A0A3D8SPD9	A0A3D8RCD7	Uncharacterized protein.	SGF29 C-terminal domain-containing protein.	0.721
BP6252_00073	BP6252_09291	A0A3D8SPD9	A0A3D8R1I6	Uncharacterized protein.	Ubiquitin carboxyl-terminal hydrolase.	0.815
BP6252_00073	BP6252_09388	A0A3D8SPD9	A0A3D8R1S2	Uncharacterized protein.	Bromo domain-containing protein.	0.614
BP6252_00073	BP6252_09431	A0A3D8SPD9	A0A3D8R1W4	Uncharacterized protein.	TFIID_20kDa domain-containing protein.	0.697
BP6252_00073	BP6252_09439	A0A3D8SPD9	A0A3D8R1X8	Uncharacterized protein.	SCA7 domain-containing protein.	0.774
BP6252_00073	BP6252_09716	A0A3D8SPD9	A0A3D8QWL0	Uncharacterized protein.	Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...]	0.816
BP6252_00073	BP6252_11704	A0A3D8SPD9	A0A3D8QKM6	Uncharacterized protein.	WD40 repeat-like protein.	0.595
BP6252_00073	BP6252_12431	A0A3D8SPD9	A0A3D8QH77	Uncharacterized protein.	Uncharacterized protein.	0.519
BP6252_00073	BP6252_12569	A0A3D8SPD9	A0A3D8QCA3	Uncharacterized protein.	SCA7 domain-containing protein.	0.774
BP6252_00073	BP6252_13415	A0A3D8SPD9	A0A3D8Q978	Uncharacterized protein.	Uncharacterized protein.	0.568
BP6252_00073	BP6252_13561	A0A3D8SPD9	A0A3D8Q909	Uncharacterized protein.	Transcriptional adapter 2; Functions as component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA and ADA. SAGA is involved in RNA polymerase II-dependent transcriptional regulation.	0.815
BP6252_00375	BP6252_00073	A0A3D8SPU7	A0A3D8SPD9	Histone-fold containing protein.	Uncharacterized protein.	0.678
BP6252_00375	BP6252_01282	A0A3D8SPU7	A0A3D8SSF3	Histone-fold containing protein.	Uncharacterized protein.	0.678
BP6252_00375	BP6252_02781	A0A3D8SPU7	A0A3D8SG76	Histone-fold containing protein.	Uncharacterized protein.	0.678