(58 nodes) SWI/SNF superfamily-type complex network (Coleophoma cylindrospora)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BP6252_02431	Uncharacterized protein. (1700 aa)
	BP6252_02377	PH domain-containing protein. (1237 aa)
	BP6252_02299	SWR1-complex protein 5. (352 aa)
	BP6252_02290	Actin-related protein 8; Probably involved in transcription regulation via its interaction with the INO80 complex, a chromatin remodeling complex. Belongs to the actin family. (890 aa)
	BP6252_03777	Putative actin; Belongs to the actin family. (466 aa)
	BP6252_03621	Uncharacterized protein. (548 aa)
	BP6252_03579	Bromo domain-containing protein. (1045 aa)
	BP6252_03478	PAPA-1 domain-containing protein. (392 aa)
	BP6252_03197	Uncharacterized protein. (277 aa)
	BP6252_04908	Fungal_trans domain-containing protein. (737 aa)
	BP6252_04269	SWI complex-like protein. (681 aa)
	BP6252_05864	Fungal_trans domain-containing protein. (636 aa)
	BP6252_05631	Uncharacterized protein. (281 aa)
	BP6252_05416	YL1_C domain-containing protein. (192 aa)
	BP6252_05392	Uncharacterized protein. (1619 aa)
	BP6252_05415	Putative ARP5-actin-related protein; Belongs to the actin family. (743 aa)
	BP6252_00908	Uncharacterized protein. (297 aa)
	BP6252_00904	Homeobox domain-containing protein. (579 aa)
	BP6252_01101	Uncharacterized protein. (506 aa)
	BP6252_01107	Uncharacterized protein. (600 aa)
	BP6252_01118	PHD domain-containing protein. (887 aa)
	BP6252_01212	Uncharacterized protein. (483 aa)
	BP6252_01383	WHIM1 domain-containing protein. (594 aa)
	BP6252_01600	SH3 domain-containing protein. (887 aa)
	BP6252_00113	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes. (470 aa)
	BP6252_02836	Uncharacterized protein. (723 aa)
	BP6252_02626	HIT-type domain-containing protein. (305 aa)
	BP6252_02058	Putative chromatin structure-remodeling complex subunit snf21. (1417 aa)
	BP6252_06407	Uncharacterized protein. (916 aa)
	BP6252_05230	Putative SWI and RSC complex subunit arp9; Belongs to the actin family. (697 aa)
	BP6252_00907	Uncharacterized protein. (650 aa)
	BP6252_00816	NET domain-containing protein. (230 aa)
	BP6252_02518	ARID domain-containing protein. (1044 aa)
	BP6252_14069	Uncharacterized protein. (451 aa)
	BP6252_12566	SNF5-domain-containing protein. (719 aa)
	BP6252_12738	HMG box domain-containing protein. (275 aa)
	BP6252_12591	WAC domain-containing protein. (1046 aa)
	BP6252_12921	Uncharacterized protein. (253 aa)
	BP6252_12328	SANT_DAMP1_like domain-containing protein. (544 aa)
	BP6252_12399	Chromatin-remodeling complex ATPase. (1120 aa)
	BP6252_12485	Zn(2)-C6 fungal-type domain-containing protein. (736 aa)
	BP6252_12473	Uncharacterized protein. (691 aa)
	BP6252_11739	Uncharacterized protein. (536 aa)
	BP6252_11112	Zn(2)-C6 fungal-type domain-containing protein. (744 aa)
	BP6252_11244	Uncharacterized protein. (376 aa)
	BP6252_10433	Uncharacterized protein. (1935 aa)
	BP6252_10459	Uncharacterized protein. (716 aa)
	BP6252_09778	SWIB domain-containing protein. (500 aa)
	BP6252_10168	Uncharacterized protein; Belongs to the actin family. (432 aa)
	BP6252_09341	Uncharacterized protein. (428 aa)
	BP6252_09374	Uncharacterized protein. (985 aa)
	BP6252_08609	CBFD_NFYB_HMF domain-containing protein. (188 aa)
	BP6252_08661	Uncharacterized protein. (1202 aa)
	BP6252_07920	WW domain-containing protein. (415 aa)
	BP6252_07817	Glycoside hydrolase family 55 protein. (971 aa)
	BP6252_07096	Uncharacterized protein. (349 aa)
	BP6252_07095	Uncharacterized protein. (313 aa)
	BP6252_07228	Uncharacterized protein. (201 aa)

Your Current Organism:

Coleophoma cylindrospora

NCBI taxonomy Id: 1849047
Other names: C. cylindrospora, Coleophoma sp. CBS 449.70, Macrophoma cylindrospora, Phoma cylindrospora, Sphaeropsis cylindrospora

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BP6252_00113	BP6252_00816	A0A3D8SPI2	A0A3D8SRD7	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	NET domain-containing protein.	0.812
BP6252_00113	BP6252_01600	A0A3D8SPI2	A0A3D8SUV9	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	SH3 domain-containing protein.	0.501
BP6252_00113	BP6252_02058	A0A3D8SPI2	A0A3D8SFD3	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	Putative chromatin structure-remodeling complex subunit snf21.	0.484
BP6252_00113	BP6252_02290	A0A3D8SPI2	A0A3D8SED9	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	Actin-related protein 8; Probably involved in transcription regulation via its interaction with the INO80 complex, a chromatin remodeling complex. Belongs to the actin family.	0.966
BP6252_00113	BP6252_02299	A0A3D8SPI2	A0A3D8SEG4	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	SWR1-complex protein 5.	0.896
BP6252_00113	BP6252_02431	A0A3D8SPI2	A0A3D8SF70	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	Uncharacterized protein.	0.965
BP6252_00113	BP6252_02626	A0A3D8SPI2	A0A3D8SFH3	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	HIT-type domain-containing protein.	0.973
BP6252_00113	BP6252_03197	A0A3D8SPI2	A0A3D8S706	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	Uncharacterized protein.	0.473
BP6252_00113	BP6252_03478	A0A3D8SPI2	A0A3D8S7U0	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	PAPA-1 domain-containing protein.	0.915
BP6252_00113	BP6252_03777	A0A3D8SPI2	A0A3D8S8I2	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	Putative actin; Belongs to the actin family.	0.985
BP6252_00113	BP6252_05230	A0A3D8SPI2	A0A3D8RSW4	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	Putative SWI and RSC complex subunit arp9; Belongs to the actin family.	0.662
BP6252_00113	BP6252_05392	A0A3D8SPI2	A0A3D8RTG3	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	Uncharacterized protein.	0.994
BP6252_00113	BP6252_05415	A0A3D8SPI2	A0A3D8RTD3	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	Putative ARP5-actin-related protein; Belongs to the actin family.	0.988
BP6252_00113	BP6252_05416	A0A3D8SPI2	A0A3D8RTI9	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	YL1_C domain-containing protein.	0.982
BP6252_00113	BP6252_07817	A0A3D8SPI2	A0A3D8RBL4	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	Glycoside hydrolase family 55 protein.	0.874
BP6252_00113	BP6252_08661	A0A3D8SPI2	A0A3D8R6R9	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	Uncharacterized protein.	0.575
BP6252_00113	BP6252_09341	A0A3D8SPI2	A0A3D8R1M8	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	Uncharacterized protein.	0.874
BP6252_00113	BP6252_10168	A0A3D8SPI2	A0A3D8QXH3	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	Uncharacterized protein; Belongs to the actin family.	0.964
BP6252_00113	BP6252_10433	A0A3D8SPI2	A0A3D8QSM4	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	Uncharacterized protein.	0.723
BP6252_00113	BP6252_10459	A0A3D8SPI2	A0A3D8QT05	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	Uncharacterized protein.	0.839