(79 nodes) Basal transcription factors network (Coleophoma cylindrospora)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BP6252_01875	BRO1 domain-containing protein. (476 aa)
	BP6252_14146	Uncharacterized protein. (517 aa)
	BP6252_14156	Protein kinase domain-containing protein. (496 aa)
	BP6252_13793	Uncharacterized protein. (480 aa)
	BP6252_13701	Uncharacterized protein. (252 aa)
	BP6252_13387	Protein kinase domain-containing protein. (885 aa)
	BP6252_12684	HTH TFE/IIEalpha-type domain-containing protein. (437 aa)
	BP6252_12856	Uncharacterized protein. (523 aa)
	BP6252_12920	NAD(P)-binding protein-9. (289 aa)
	BP6252_12844	Uncharacterized protein. (404 aa)
	BP6252_12219	Putative transcription initiation factor TFIID subunit 13. (142 aa)
	BP6252_12214	Uncharacterized protein. (265 aa)
	BP6252_11372	Uncharacterized protein. (496 aa)
	BP6252_11792	Uncharacterized protein. (454 aa)
	BP6252_10816	Uncharacterized protein. (566 aa)
	BP6252_10970	Uncharacterized protein. (285 aa)
	BP6252_10963	Uncharacterized protein. (512 aa)
	BP6252_10454	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (397 aa)
	BP6252_10604	Urb2 domain-containing protein. (1400 aa)
	BP6252_10668	Uncharacterized protein. (645 aa)
	BP6252_10661	Chromatin modification-related protein. (695 aa)
	BP6252_09588	Uncharacterized protein. (568 aa)
	BP6252_09670	Uncharacterized protein. (355 aa)
	BP6252_09686	RanBP2-type domain-containing protein. (397 aa)
	BP6252_09811	RNA-binding-containing protein. (319 aa)
	BP6252_09716	Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...] (206 aa)
	BP6252_09795	TATA-box binding protein. (258 aa)
	BP6252_09833	Putative transcription initiation factor IIB. (352 aa)
	BP6252_09876	Putative excision repair protein rhp3. (786 aa)
	BP6252_10059	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (427 aa)
	BP6252_09132	Uncharacterized protein. (255 aa)
	BP6252_09181	Zn(2)-C6 fungal-type domain-containing protein. (863 aa)
	BP6252_09177	Chromatin modification-related protein. (421 aa)
	BP6252_09431	TFIID_20kDa domain-containing protein. (634 aa)
	BP6252_09497	Uncharacterized protein. (374 aa)
	BP6252_08418	Uncharacterized protein. (370 aa)
	BP6252_08508	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (115 aa)
	BP6252_07679	Uncharacterized protein. (1126 aa)
	BP6252_07749	Uncharacterized protein. (704 aa)
	BP6252_07674	PHD-type domain-containing protein. (790 aa)
	BP6252_07868	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (513 aa)
	BP6252_06705	Uncharacterized protein. (272 aa)
	BP6252_06896	Uncharacterized protein. (408 aa)
	BP6252_06930	Uncharacterized protein. (542 aa)
	BP6252_07089	Uncharacterized protein. (1487 aa)
	BP6252_07209	Uncharacterized protein. (408 aa)
	BP6252_07111	TFIID-domain-containing protein. (246 aa)
	BP6252_07380	Uncharacterized protein. (297 aa)
	BP6252_07281	RNA polymerase II transcription factor-like protein B subunit 3. (375 aa)
	BP6252_05250	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (735 aa)
	BP6252_05314	HMG box domain-containing protein. (521 aa)
	BP6252_05708	Uncharacterized protein. (498 aa)
	BP6252_05681	Uncharacterized protein. (346 aa)
	BP6252_05889	Uncharacterized protein. (456 aa)
	BP6252_04530	GFO_IDH_MocA domain-containing protein. (354 aa)
	BP6252_03165	Uncharacterized protein. (307 aa)
	BP6252_03178	Uncharacterized protein. (71 aa)
	BP6252_02966	Uncharacterized protein. (451 aa)
	BP6252_03348	Uncharacterized protein. (428 aa)
	BP6252_03745	DUF3591 domain-containing protein. (1074 aa)
	BP6252_01872	TAFII55_N domain-containing protein. (539 aa)
	BP6252_01873	BTP domain-containing protein. (210 aa)
	BP6252_02015	Uncharacterized protein. (369 aa)
	BP6252_02433	Zn(2)-C6 fungal-type domain-containing protein. (518 aa)
	BP6252_02068	CYCLIN domain-containing protein; Belongs to the cyclin family. (370 aa)
	BP6252_00228	Uncharacterized protein. (666 aa)
	BP6252_00272	Uncharacterized protein. (833 aa)
	BP6252_00375	Histone-fold containing protein. (463 aa)
	BP6252_00378	Histone-fold containing protein. (322 aa)
	BP6252_00545	Uncharacterized protein. (1796 aa)
	BP6252_00443	Acyl_transf_3 domain-containing protein. (451 aa)
	BP6252_00604	Uncharacterized protein. (373 aa)
	BP6252_00713	DUF4211 domain-containing protein. (744 aa)
	BP6252_00816	NET domain-containing protein. (230 aa)
	BP6252_01259	Uncharacterized protein. (494 aa)
	BP6252_00800	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (298 aa)
	BP6252_01691	Uncharacterized protein. (435 aa)
	BP6252_01732	Zn(2)-C6 fungal-type domain-containing protein. (740 aa)
	BP6252_01600	SH3 domain-containing protein. (887 aa)

Your Current Organism:

Coleophoma cylindrospora

NCBI taxonomy Id: 1849047
Other names: C. cylindrospora, Coleophoma sp. CBS 449.70, Macrophoma cylindrospora, Phoma cylindrospora, Sphaeropsis cylindrospora

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BP6252_00228	BP6252_00545	A0A3D8SPH0	A0A3D8SQC0	Uncharacterized protein.	Uncharacterized protein.	0.410
BP6252_00272	BP6252_00375	A0A3D8SPJ4	A0A3D8SPU7	Uncharacterized protein.	Histone-fold containing protein.	0.897
BP6252_00272	BP6252_00378	A0A3D8SPJ4	A0A3D8SPW2	Uncharacterized protein.	Histone-fold containing protein.	0.831
BP6252_00272	BP6252_00443	A0A3D8SPJ4	A0A3D8SQF8	Uncharacterized protein.	Acyl_transf_3 domain-containing protein.	0.831
BP6252_00272	BP6252_00713	A0A3D8SPJ4	A0A3D8SR83	Uncharacterized protein.	DUF4211 domain-containing protein.	0.821
BP6252_00272	BP6252_00800	A0A3D8SPJ4	A0A3D8SSM2	Uncharacterized protein.	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.	0.996
BP6252_00272	BP6252_00816	A0A3D8SPJ4	A0A3D8SRD7	Uncharacterized protein.	NET domain-containing protein.	0.564
BP6252_00272	BP6252_01600	A0A3D8SPJ4	A0A3D8SUV9	Uncharacterized protein.	SH3 domain-containing protein.	0.991
BP6252_00272	BP6252_01872	A0A3D8SPJ4	A0A3D8SD65	Uncharacterized protein.	TAFII55_N domain-containing protein.	0.879
BP6252_00272	BP6252_02015	A0A3D8SPJ4	A0A3D8SDK9	Uncharacterized protein.	Uncharacterized protein.	0.985
BP6252_00272	BP6252_02068	A0A3D8SPJ4	A0A3D8SFE4	Uncharacterized protein.	CYCLIN domain-containing protein; Belongs to the cyclin family.	0.990
BP6252_00272	BP6252_03165	A0A3D8SPJ4	A0A3D8S6Y6	Uncharacterized protein.	Uncharacterized protein.	0.625
BP6252_00272	BP6252_03178	A0A3D8SPJ4	A0A3D8S716	Uncharacterized protein.	Uncharacterized protein.	0.998
BP6252_00272	BP6252_03348	A0A3D8SPJ4	A0A3D8S7H8	Uncharacterized protein.	Uncharacterized protein.	0.968
BP6252_00272	BP6252_03745	A0A3D8SPJ4	A0A3D8S8L5	Uncharacterized protein.	DUF3591 domain-containing protein.	0.878
BP6252_00272	BP6252_05250	A0A3D8SPJ4	A0A3D8RSY2	Uncharacterized protein.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.980
BP6252_00272	BP6252_05314	A0A3D8SPJ4	A0A3D8RTY8	Uncharacterized protein.	HMG box domain-containing protein.	0.830
BP6252_00272	BP6252_06896	A0A3D8SPJ4	A0A3D8RG10	Uncharacterized protein.	Uncharacterized protein.	0.978
BP6252_00272	BP6252_07089	A0A3D8SPJ4	A0A3D8RGM0	Uncharacterized protein.	Uncharacterized protein.	0.902
BP6252_00272	BP6252_07111	A0A3D8SPJ4	A0A3D8RH38	Uncharacterized protein.	TFIID-domain-containing protein.	0.877