STRINGSTRING
BP6252_13404 BP6252_13404 BP6252_13417 BP6252_13417 BP6252_13490 BP6252_13490 BP6252_13547 BP6252_13547 BP6252_13449 BP6252_13449 BP6252_13666 BP6252_13666 BP6252_13571 BP6252_13571 BP6252_13539 BP6252_13539 BP6252_13415 BP6252_13415 BP6252_13318 BP6252_13318 BP6252_13247 BP6252_13247 BP6252_13328 BP6252_13328 BP6252_13257 BP6252_13257 BP6252_12826 BP6252_12826 BP6252_12889 BP6252_12889 BP6252_12919 BP6252_12919 BP6252_12551 BP6252_12551 BP6252_12253 BP6252_12253 BP6252_12330 BP6252_12330 BP6252_12468 BP6252_12468 BP6252_12460 BP6252_12460 BP6252_12443 BP6252_12443 BP6252_11501 BP6252_11501 BP6252_11605 BP6252_11605 BP6252_11604 BP6252_11604 BP6252_11660 BP6252_11660 BP6252_11738 BP6252_11738 BP6252_11735 BP6252_11735 BP6252_11680 BP6252_11680 BP6252_11859 BP6252_11859 BP6252_11754 BP6252_11754 BP6252_11747 BP6252_11747 BP6252_11197 BP6252_11197 BP6252_10919 BP6252_10919 BP6252_10434 BP6252_10434 BP6252_10508 BP6252_10508 LSM5 LSM5 BP6252_09698 BP6252_09698 BP6252_09697 BP6252_09697 BP6252_09693 BP6252_09693 BP6252_09715 BP6252_09715 BP6252_09851 BP6252_09851 BP6252_09824 BP6252_09824 BP6252_09887 BP6252_09887 BP6252_09793 BP6252_09793 BP6252_09925 BP6252_09925 BP6252_09923 BP6252_09923 BP6252_09002 BP6252_09002 BP6252_08906 BP6252_08906 BP6252_09102 BP6252_09102 BP6252_09135 BP6252_09135 BP6252_09131 BP6252_09131 BP6252_09189 BP6252_09189 BP6252_09171 BP6252_09171 BP6252_09238 BP6252_09238 BP6252_09308 BP6252_09308 BP6252_09515 BP6252_09515 BP6252_08356 BP6252_08356 BP6252_08398 BP6252_08398 BP6252_08592 BP6252_08592 BP6252_08652 BP6252_08652 BP6252_08610 BP6252_08610 BP6252_08650 BP6252_08650 BP6252_08737 BP6252_08737 BP6252_08744 BP6252_08744 BP6252_07542 BP6252_07542 BP6252_07746 BP6252_07746 BP6252_07770 BP6252_07770 BP6252_07803 BP6252_07803 BP6252_07727 BP6252_07727 BP6252_08185 BP6252_08185 BP6252_07094 BP6252_07094 BP6252_06995 BP6252_06995 BP6252_06991 BP6252_06991 BP6252_07145 BP6252_07145 BP6252_07233 BP6252_07233 BP6252_06078 BP6252_06078 BP6252_06259 BP6252_06259 BP6252_06271 BP6252_06271 BP6252_06126 BP6252_06126 BP6252_06385 BP6252_06385 BP6252_06608 BP6252_06608 BP6252_05206 BP6252_05206 BP6252_05365 BP6252_05365 BP6252_05360 BP6252_05360 BP6252_05147 BP6252_05147 BP6252_05283 BP6252_05283 BP6252_05440 BP6252_05440 BP6252_05358 BP6252_05358 BP6252_05533 BP6252_05533 BP6252_05593 BP6252_05593 BP6252_05444 BP6252_05444 BP6252_05663 BP6252_05663 BP6252_05822 BP6252_05822 BP6252_05894 BP6252_05894 BP6252_03996 BP6252_03996 BP6252_04137 BP6252_04137 BP6252_04337 BP6252_04337 BP6252_04119 BP6252_04119 BP6252_04179 BP6252_04179 BP6252_04503 BP6252_04503 BP6252_04533 BP6252_04533 BP6252_04577 BP6252_04577 BP6252_04676 BP6252_04676 BP6252_04539 BP6252_04539 BP6252_04775 BP6252_04775 BP6252_04806 BP6252_04806 BP6252_04772 BP6252_04772 BP6252_04918 BP6252_04918 BP6252_04862 BP6252_04862 BP6252_02931 BP6252_02931 BP6252_02999 BP6252_02999 BP6252_03070 BP6252_03070 BP6252_03090 BP6252_03090 BP6252_03104 BP6252_03104 BP6252_03130 BP6252_03130 BP6252_03191 BP6252_03191 BP6252_03229 BP6252_03229 BP6252_03244 BP6252_03244 BP6252_03359 BP6252_03359 BP6252_03419 BP6252_03419 BP6252_03263 BP6252_03263 BP6252_03705 BP6252_03705 BP6252_03914 BP6252_03914 BP6252_03822 BP6252_03822 BP6252_03906 BP6252_03906 BP6252_02032 BP6252_02032 BP6252_02042 BP6252_02042 BP6252_02099 BP6252_02099 BP6252_02144 BP6252_02144 BP6252_02452 BP6252_02452 BP6252_02453 BP6252_02453 BP6252_02592 BP6252_02592 BP6252_02584 BP6252_02584 BP6252_02806 BP6252_02806 BP6252_00057 BP6252_00057 BP6252_00078 BP6252_00078 BP6252_00291 BP6252_00291 BP6252_00355 BP6252_00355 BP6252_00316 BP6252_00316 BP6252_00479 BP6252_00479 BP6252_00628 BP6252_00628 BP6252_00619 BP6252_00619 BP6252_00170 BP6252_00170 LSM3 LSM3 BP6252_00768 BP6252_00768 BP6252_00686 BP6252_00686 BP6252_00290 BP6252_00290 BP6252_00872 BP6252_00872 BP6252_00864 BP6252_00864 BP6252_00928 BP6252_00928 BP6252_00929 BP6252_00929 LSM8 LSM8 BP6252_00956 BP6252_00956 BP6252_00670 BP6252_00670 BP6252_01345 BP6252_01345 BP6252_01346 BP6252_01346 BP6252_00880 BP6252_00880 BP6252_01366 BP6252_01366 BP6252_01502 BP6252_01502 BP6252_01558 BP6252_01558 BP6252_01621 BP6252_01621 BP6252_01622 BP6252_01622 BP6252_01240 BP6252_01240
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
BP6252_13404RRM domain-containing protein. (198 aa)
BP6252_13417ArAE_2 domain-containing protein. (1064 aa)
BP6252_13490Uncharacterized protein. (1388 aa)
BP6252_13547ArAE_2_N domain-containing protein. (1030 aa)
BP6252_13449Potassium efflux P-type ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. (1054 aa)
BP6252_13666Oxidoreductase AflY. (467 aa)
BP6252_13571Uncharacterized protein. (774 aa)
BP6252_13539CVNH domain-containing protein. (130 aa)
BP6252_13415Uncharacterized protein. (451 aa)
BP6252_13318Uncharacterized protein. (538 aa)
BP6252_13247WD_REPEATS_REGION domain-containing protein. (936 aa)
BP6252_13328Uncharacterized protein. (1448 aa)
BP6252_13257Uncharacterized protein. (1024 aa)
BP6252_12826Cwf15 cell cycle control family protein-like protein. (234 aa)
BP6252_12889Nuclear cap-binding protein subunit 2. (180 aa)
BP6252_12919SYF2-domain-containing protein. (295 aa)
BP6252_12551PHF5-like protein. (108 aa)
BP6252_12253G-patch domain-containing protein. (495 aa)
BP6252_12330Uncharacterized protein. (206 aa)
BP6252_12468Uncharacterized protein. (215 aa)
BP6252_12460ATP-dependent RNA helicase DBP3; Belongs to the DEAD box helicase family. (592 aa)
BP6252_12443Uncharacterized protein. (306 aa)
BP6252_11501Uncharacterized protein. (1370 aa)
BP6252_11605Uncharacterized protein. (72 aa)
BP6252_11604RRM domain-containing protein. (377 aa)
BP6252_11660PRP38-domain-containing protein. (246 aa)
BP6252_11738Uncharacterized protein. (619 aa)
BP6252_11735Uncharacterized protein. (1207 aa)
BP6252_11680C2H2-type domain-containing protein. (186 aa)
BP6252_11859Uncharacterized protein. (1024 aa)
BP6252_11754Isy1-like splicing factor. (245 aa)
BP6252_11747WD_REPEATS_REGION domain-containing protein. (1235 aa)
BP6252_11197WD_REPEATS_REGION domain-containing protein. (338 aa)
BP6252_10919Uncharacterized protein. (660 aa)
BP6252_10434G-patch_2 domain-containing protein. (366 aa)
BP6252_10508Uncharacterized protein. (633 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (50 aa)
BP6252_09698Sm domain-containing protein. (86 aa)
BP6252_09697Putative DUF866 protein. (156 aa)
BP6252_09693RRM domain-containing protein. (255 aa)
BP6252_09715Uncharacterized protein. (758 aa)
BP6252_09851Putative BRE4. (1145 aa)
BP6252_09824WD40 repeat-like protein. (482 aa)
BP6252_09887Uncharacterized protein. (171 aa)
BP6252_09793CID domain-containing protein. (809 aa)
BP6252_09925C3H1-type domain-containing protein. (380 aa)
BP6252_09923Matrin-type domain-containing protein. (240 aa)
BP6252_09002Cysteine proteinase-2. (536 aa)
BP6252_08906Uncharacterized protein. (596 aa)
BP6252_09102Sec63-domain-containing protein. (2246 aa)
BP6252_09135ATP-dependent RNA helicase Prh1. (908 aa)
BP6252_09131Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (132 aa)
BP6252_09189Splicing factor U2af subunit. (209 aa)
BP6252_09171Sm domain-containing protein. (196 aa)
BP6252_09238RRM domain-containing protein. (159 aa)
BP6252_09308Uncharacterized protein. (750 aa)
BP6252_09515Zn(2)-C6 fungal-type domain-containing protein. (723 aa)
BP6252_08356Uncharacterized protein. (1021 aa)
BP6252_08398Uncharacterized protein. (785 aa)
BP6252_08592Putative sodium p-type atpase protein; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. (1062 aa)
BP6252_08652Putative pre-mRNA-splicing factor syf1 protein. (826 aa)
BP6252_08610Uncharacterized protein. (250 aa)
BP6252_08650RNA recognition-containing protein. (250 aa)
BP6252_08737ATP-dependent RNA helicase DHX8. (1201 aa)
BP6252_08744G-patch domain-containing protein. (237 aa)
BP6252_07542Cyanovirin-n family protein. (127 aa)
BP6252_07746Uncharacterized protein. (145 aa)
BP6252_07770Transformer-SR ribonucleoprotein recognition motif containing protein. (330 aa)
BP6252_07803Uncharacterized protein. (342 aa)
BP6252_07727CPSF_A domain-containing protein. (1212 aa)
BP6252_08185Uncharacterized protein. (993 aa)
BP6252_07094Heat shock protein SSB; Belongs to the heat shock protein 70 family. (591 aa)
BP6252_06995Putative ribosomal elongation factor EF-2. (983 aa)
BP6252_06991Small nuclear ribonucleoprotein G. (82 aa)
BP6252_07145Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (182 aa)
BP6252_07233Uncharacterized protein. (639 aa)
BP6252_06078Uncharacterized protein. (814 aa)
BP6252_06259Uncharacterized protein. (500 aa)
BP6252_06271Tudor domain-containing protein. (291 aa)
BP6252_06126Putative heat shock protein 2; Belongs to the heat shock protein 70 family. (650 aa)
BP6252_06385Uncharacterized protein. (974 aa)
BP6252_06608WW domain-containing protein. (560 aa)
BP6252_05206Pre-mRNA-splicing ATP-dependent RNA helicase PRP28. (820 aa)
BP6252_05365Sm-like ribonucleoprotein. (82 aa)
BP6252_05360Uncharacterized protein. (133 aa)
BP6252_05147Putative pre-mRNA splicing factor ATP-dependent RNA helicase PRP16. (1001 aa)
BP6252_05283Uncharacterized protein. (2435 aa)
BP6252_05440Uncharacterized protein. (522 aa)
BP6252_05358RRM domain-containing protein. (343 aa)
BP6252_05533Putative phosducin-like protein 2. (257 aa)
BP6252_05593Putative ribosome-associated complex subunit SSZ1; Belongs to the heat shock protein 70 family. (564 aa)
BP6252_05444Slu7 domain-containing protein. (474 aa)
BP6252_05663Uncharacterized protein. (585 aa)
BP6252_05822SAP domain-containing protein. (639 aa)
BP6252_05894Uncharacterized protein. (277 aa)
BP6252_03996ATPase_2 domain-containing protein. (527 aa)
BP6252_04137Uncharacterized protein. (1272 aa)
BP6252_04337Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (95 aa)
BP6252_04119Uncharacterized protein. (563 aa)
BP6252_04179C2H2-type domain-containing protein. (235 aa)
BP6252_04503Putative pre-mRNA splicing protein PRP2. (1014 aa)
BP6252_04533Spliceosomal protein DIB1; Essential role in pre-mRNA splicing. Also essential for entry into mitosis (G2/M progression) as well as for chromosome segregation during mitosis; Belongs to the DIM1 family. (163 aa)
BP6252_04577Uncharacterized protein. (439 aa)
BP6252_04676But2 domain-containing protein. (367 aa)
BP6252_04539Putative pre-mRNA splicing factor prp1. (960 aa)
BP6252_04775Uncharacterized protein. (734 aa)
BP6252_04806Uncharacterized protein. (456 aa)
BP6252_04772Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (162 aa)
BP6252_04918Cutinase; Catalyzes the hydrolysis of cutin, a polyester that forms the structure of plant cuticle. (313 aa)
BP6252_04862Small nuclear ribonucleoprotein. (132 aa)
BP6252_02931Rhamnogalacturonate lyase. (683 aa)
BP6252_02999Cation_ATPase_N domain-containing protein; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. (1150 aa)
BP6252_03070Putative U5 snRNP-specific protein. (355 aa)
BP6252_03090DUF1716 domain-containing protein. (585 aa)
BP6252_03104Uncharacterized protein. (730 aa)
BP6252_03130Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (126 aa)
BP6252_03191Uncharacterized protein. (300 aa)
BP6252_03229Actin-like ATPase-containing protein. (629 aa)
BP6252_03244U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (184 aa)
BP6252_03359RRM domain-containing protein. (153 aa)
BP6252_03419Uncharacterized protein. (660 aa)
BP6252_03263P-loop containing nucleoside triphosphate hydrolase-17. (697 aa)
BP6252_03705WD-containing protein. (528 aa)
BP6252_03914Uncharacterized protein. (672 aa)
BP6252_03822RRM domain-containing protein. (152 aa)
BP6252_03906Isochorismatase-like hydrolase. (275 aa)
BP6252_02032Sm domain-containing protein. (63 aa)
BP6252_02042WD_REPEATS_REGION domain-containing protein. (518 aa)
BP6252_02099Uncharacterized protein. (661 aa)
BP6252_02144Microtuble-associated protein EB1. (245 aa)
BP6252_02452Uncharacterized protein; Belongs to the DEAD box helicase family. (400 aa)
BP6252_02453C2H2 and C2HC zinc finger-3. (501 aa)
BP6252_02592U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (593 aa)
BP6252_02584ARM repeat-containing protein. (1220 aa)
BP6252_02806RRM domain-containing protein. (120 aa)
BP6252_00057PPIase cyclophilin-type domain-containing protein. (538 aa)
BP6252_00078Splicing factor 3b. (571 aa)
BP6252_00291GH16 domain-containing protein. (461 aa)
BP6252_00355Uncharacterized protein. (443 aa)
BP6252_00316CID domain-containing protein. (535 aa)
BP6252_00479Uncharacterized protein. (623 aa)
BP6252_00628Uncharacterized protein. (880 aa)
BP6252_00619RRM domain-containing protein. (464 aa)
BP6252_00170Uncharacterized protein. (351 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
BP6252_00768Pre-mRNA-processing-splicing factor 8. (3220 aa)
BP6252_00686Uncharacterized protein. (1087 aa)
BP6252_00290SKIP_SNW domain-containing protein. (594 aa)
BP6252_00872Uncharacterized protein. (1227 aa)
BP6252_00864Uncharacterized protein. (333 aa)
BP6252_00928TPR-like protein. (678 aa)
BP6252_00929Nop domain-containing protein. (640 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
BP6252_00956Uncharacterized protein. (162 aa)
BP6252_00670Small nuclear ribonucleoprotein Sm D2. (118 aa)
BP6252_01345RNA-binding-containing protein. (348 aa)
BP6252_01346Putative nuclear cap-binding complex subunit NCBP1. (808 aa)
BP6252_00880Uncharacterized protein. (796 aa)
BP6252_01366Uncharacterized protein; Belongs to the DEAD box helicase family. (568 aa)
BP6252_01502Uncharacterized protein. (175 aa)
BP6252_01558WD_REPEATS_REGION domain-containing protein. (1386 aa)
BP6252_01621Guanylate kinase-like domain-containing protein. (867 aa)
BP6252_01622Pre-mRNA-splicing factor; Involved in mRNA splicing where it associates with cdc5 and the other cwf proteins as part of the spliceosome. (1434 aa)
BP6252_01240SNRNP27 domain-containing protein. (313 aa)
Your Current Organism:
Coleophoma cylindrospora
NCBI taxonomy Id: 1849047
Other names: C. cylindrospora, Coleophoma sp. CBS 449.70, Macrophoma cylindrospora, Phoma cylindrospora, Sphaeropsis cylindrospora
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