(18 nodes) Spliceosomal snRNP complex, and mRNA Splicing - Major Pathway network (Giardia lamblia ATCC 50803)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GL50803_17126	PSP domain-containing protein. (309 aa)
	GL50803_22112	U6 snRNA-associated Sm-like protein LSm3, putative. (126 aa)
	GL50803_10857	Small nuclear ribonucleoprotein B, putative. (129 aa)
	GL50803_25011	Splicing factor 3B subunit, putative. (190 aa)
	GL50803_15500	Uncharacterized protein. (143 aa)
	GL50803_7296	U2 small nuclear ribonucleoprotein A' putative. (185 aa)
	GL50803_13464	Splicesome-associated protein. (463 aa)
	GL50803_32531	Uncharacterized protein. (88 aa)
	GL50803_4954	Small nuclear ribonucleoprotein F, putative. (107 aa)
	GL50803_10755	Splicing factor 3A subunit 2. (222 aa)
	GL50803_32297	Small nuclear ribonucleoprotein Sm D2, putative. (124 aa)
	GL50803_91476	Uncharacterized protein. (1068 aa)
	GL50803_18713	U6 snRNA-associated Sm-like protein LSm2, putative. (107 aa)
	GL50803_112114	Splicing factor-like protein, putative. (2309 aa)
	GL50803_6616	RNA helicase, putative. (792 aa)
	GL50803_16141	Ser/Thr protein kinase pkwA, putative. (489 aa)
	GL50803_12164	Small nuclear ribonucleoprotein Sm D3, putative. (90 aa)
	GL50803_5522	Uncharacterized protein. (1007 aa)

Your Current Organism:

Giardia lamblia ATCC 50803

NCBI taxonomy Id: 184922
Other names: G. lamblia ATCC 50803, Giardia intestinalis ATCC 50803

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GL50803_10755	GL50803_10857	A8BJH8	A8B788	Splicing factor 3A subunit 2.	Small nuclear ribonucleoprotein B, putative.	0.999
GL50803_10755	GL50803_112114	A8BJH8	A8BTS5	Splicing factor 3A subunit 2.	Splicing factor-like protein, putative.	0.999
GL50803_10755	GL50803_12164	A8BJH8	A8BZP8	Splicing factor 3A subunit 2.	Small nuclear ribonucleoprotein Sm D3, putative.	0.999
GL50803_10755	GL50803_13464	A8BJH8	A8BBX4	Splicing factor 3A subunit 2.	Splicesome-associated protein.	0.999
GL50803_10755	GL50803_15500	A8BJH8	A8B8S6	Splicing factor 3A subunit 2.	Uncharacterized protein.	0.840
GL50803_10755	GL50803_16141	A8BJH8	A8BVI7	Splicing factor 3A subunit 2.	Ser/Thr protein kinase pkwA, putative.	0.915
GL50803_10755	GL50803_17126	A8BJH8	A8B446	Splicing factor 3A subunit 2.	PSP domain-containing protein.	0.999
GL50803_10755	GL50803_18713	A8BJH8	A8BT30	Splicing factor 3A subunit 2.	U6 snRNA-associated Sm-like protein LSm2, putative.	0.964
GL50803_10755	GL50803_22112	A8BJH8	A8B4P7	Splicing factor 3A subunit 2.	U6 snRNA-associated Sm-like protein LSm3, putative.	0.928
GL50803_10755	GL50803_25011	A8BJH8	A8B7X6	Splicing factor 3A subunit 2.	Splicing factor 3B subunit, putative.	0.999
GL50803_10755	GL50803_32297	A8BJH8	A8BLX8	Splicing factor 3A subunit 2.	Small nuclear ribonucleoprotein Sm D2, putative.	0.999
GL50803_10755	GL50803_32531	A8BJH8	A8BE26	Splicing factor 3A subunit 2.	Uncharacterized protein.	0.999
GL50803_10755	GL50803_4954	A8BJH8	A8BEC2	Splicing factor 3A subunit 2.	Small nuclear ribonucleoprotein F, putative.	0.999
GL50803_10755	GL50803_5522	A8BJH8	D3KHM3	Splicing factor 3A subunit 2.	Uncharacterized protein.	0.999
GL50803_10755	GL50803_6616	A8BJH8	A8BUM1	Splicing factor 3A subunit 2.	RNA helicase, putative.	0.980
GL50803_10755	GL50803_7296	A8BJH8	A8BAM6	Splicing factor 3A subunit 2.	U2 small nuclear ribonucleoprotein A' putative.	0.999
GL50803_10755	GL50803_91476	A8BJH8	A8BNR9	Splicing factor 3A subunit 2.	Uncharacterized protein.	0.999
GL50803_10857	GL50803_10755	A8B788	A8BJH8	Small nuclear ribonucleoprotein B, putative.	Splicing factor 3A subunit 2.	0.999
GL50803_10857	GL50803_112114	A8B788	A8BTS5	Small nuclear ribonucleoprotein B, putative.	Splicing factor-like protein, putative.	0.999
GL50803_10857	GL50803_12164	A8B788	A8BZP8	Small nuclear ribonucleoprotein B, putative.	Small nuclear ribonucleoprotein Sm D3, putative.	0.999