(13 nodes) LSM domain superfamily network (Giardia lamblia ATCC 50803)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GL50803_12164	Small nuclear ribonucleoprotein Sm D3, putative. (90 aa)
	GL50803_3733	Uncharacterized protein. (91 aa)
	GL50803_18713	U6 snRNA-associated Sm-like protein LSm2, putative. (107 aa)
	GL50803_6179	SnRNP Sm-like protein, putative. (78 aa)
	GL50803_2597	SnRNP Sm-like protein, putative. (85 aa)
	GL50803_6408	SnRNP Sm-like protein, putative. (125 aa)
	GL50803_32297	Small nuclear ribonucleoprotein Sm D2, putative. (124 aa)
	GL50803_10857	Small nuclear ribonucleoprotein B, putative. (129 aa)
	GL50803_29277	Sm domain-containing protein. (66 aa)
	GL50803_12119	SnRNP Sm-like protein, putative. (95 aa)
	GL50803_4954	Small nuclear ribonucleoprotein F, putative. (107 aa)
	GL50803_22112	U6 snRNA-associated Sm-like protein LSm3, putative. (126 aa)
	GL50803_221690	Small nuclear ribonucleoprotein Sm D3, putative. (62 aa)

Your Current Organism:

Giardia lamblia ATCC 50803

NCBI taxonomy Id: 184922
Other names: G. lamblia ATCC 50803, Giardia intestinalis ATCC 50803

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GL50803_10857	GL50803_12164	A8B788	A8BZP8	Small nuclear ribonucleoprotein B, putative.	Small nuclear ribonucleoprotein Sm D3, putative.	0.999
GL50803_10857	GL50803_18713	A8B788	A8BT30	Small nuclear ribonucleoprotein B, putative.	U6 snRNA-associated Sm-like protein LSm2, putative.	0.999
GL50803_10857	GL50803_22112	A8B788	A8B4P7	Small nuclear ribonucleoprotein B, putative.	U6 snRNA-associated Sm-like protein LSm3, putative.	0.999
GL50803_10857	GL50803_221690	A8B788	A8BZR3	Small nuclear ribonucleoprotein B, putative.	Small nuclear ribonucleoprotein Sm D3, putative.	0.540
GL50803_10857	GL50803_2597	A8B788	A8BQC4	Small nuclear ribonucleoprotein B, putative.	SnRNP Sm-like protein, putative.	0.540
GL50803_10857	GL50803_32297	A8B788	A8BLX8	Small nuclear ribonucleoprotein B, putative.	Small nuclear ribonucleoprotein Sm D2, putative.	0.999
GL50803_10857	GL50803_4954	A8B788	A8BEC2	Small nuclear ribonucleoprotein B, putative.	Small nuclear ribonucleoprotein F, putative.	0.999
GL50803_10857	GL50803_6179	A8B788	A8BRN2	Small nuclear ribonucleoprotein B, putative.	SnRNP Sm-like protein, putative.	0.540
GL50803_10857	GL50803_6408	A8B788	A8BQ97	Small nuclear ribonucleoprotein B, putative.	SnRNP Sm-like protein, putative.	0.540
GL50803_12119	GL50803_12164	A8B9F2	A8BZP8	SnRNP Sm-like protein, putative.	Small nuclear ribonucleoprotein Sm D3, putative.	0.900
GL50803_12119	GL50803_221690	A8B9F2	A8BZR3	SnRNP Sm-like protein, putative.	Small nuclear ribonucleoprotein Sm D3, putative.	0.900
GL50803_12119	GL50803_2597	A8B9F2	A8BQC4	SnRNP Sm-like protein, putative.	SnRNP Sm-like protein, putative.	0.900
GL50803_12119	GL50803_4954	A8B9F2	A8BEC2	SnRNP Sm-like protein, putative.	Small nuclear ribonucleoprotein F, putative.	0.900
GL50803_12164	GL50803_10857	A8BZP8	A8B788	Small nuclear ribonucleoprotein Sm D3, putative.	Small nuclear ribonucleoprotein B, putative.	0.999
GL50803_12164	GL50803_12119	A8BZP8	A8B9F2	Small nuclear ribonucleoprotein Sm D3, putative.	SnRNP Sm-like protein, putative.	0.900
GL50803_12164	GL50803_18713	A8BZP8	A8BT30	Small nuclear ribonucleoprotein Sm D3, putative.	U6 snRNA-associated Sm-like protein LSm2, putative.	0.999
GL50803_12164	GL50803_22112	A8BZP8	A8B4P7	Small nuclear ribonucleoprotein Sm D3, putative.	U6 snRNA-associated Sm-like protein LSm3, putative.	0.998
GL50803_12164	GL50803_221690	A8BZP8	A8BZR3	Small nuclear ribonucleoprotein Sm D3, putative.	Small nuclear ribonucleoprotein Sm D3, putative.	0.900
GL50803_12164	GL50803_2597	A8BZP8	A8BQC4	Small nuclear ribonucleoprotein Sm D3, putative.	SnRNP Sm-like protein, putative.	0.900
GL50803_12164	GL50803_32297	A8BZP8	A8BLX8	Small nuclear ribonucleoprotein Sm D3, putative.	Small nuclear ribonucleoprotein Sm D2, putative.	0.999