(16 nodes) RNA-binding domain superfamily network (Giardia lamblia ATCC 50803)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GL50803_5942	Polyadenylate-binding protein, putative. (442 aa)
	GL50803_6054	RNA binding putative. (188 aa)
	GL50803_17584	RRM domain-containing protein. (312 aa)
	GL50803_8427	Transcriptional repressor NOT4Hp, putative. (342 aa)
	GL50803_11186	RNA binding protein, putative. (273 aa)
	GL50803_25011	Splicing factor 3B subunit, putative. (190 aa)
	GL50803_15495	RRM domain-containing protein. (871 aa)
	GL50803_7204	Uncharacterized protein. (159 aa)
	GL50803_6212	RRM domain-containing protein. (620 aa)
	GL50803_3993	Polyadenylate-binding protein, putative. (663 aa)
	GL50803_93463	RRM domain-containing protein. (155 aa)
	GL50803_10427	U2 small nuclear ribonucleoprotein B, putative. (84 aa)
	GL50803_8848	RRM domain-containing protein. (227 aa)
	GL50803_9803	La ribonucleoprotein, putative. (348 aa)
	GL50803_92031	RNA binding protein, putative. (1025 aa)
	GL50803_3294	Uncharacterized protein. (197 aa)

Your Current Organism:

Giardia lamblia ATCC 50803

NCBI taxonomy Id: 184922
Other names: G. lamblia ATCC 50803, Giardia intestinalis ATCC 50803

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GL50803_15495	GL50803_5942	A8B8T3	A8BKJ8	RRM domain-containing protein.	Polyadenylate-binding protein, putative.	0.686
GL50803_3294	GL50803_3993	D3KI59	A8BKE6	Uncharacterized protein.	Polyadenylate-binding protein, putative.	0.518
GL50803_3294	GL50803_6054	D3KI59	A8B3D2	Uncharacterized protein.	RNA binding putative.	0.597
GL50803_3294	GL50803_92031	D3KI59	A8BU38	Uncharacterized protein.	RNA binding protein, putative.	0.549
GL50803_3993	GL50803_3294	A8BKE6	D3KI59	Polyadenylate-binding protein, putative.	Uncharacterized protein.	0.518
GL50803_3993	GL50803_6054	A8BKE6	A8B3D2	Polyadenylate-binding protein, putative.	RNA binding putative.	0.686
GL50803_3993	GL50803_92031	A8BKE6	A8BU38	Polyadenylate-binding protein, putative.	RNA binding protein, putative.	0.838
GL50803_5942	GL50803_15495	A8BKJ8	A8B8T3	Polyadenylate-binding protein, putative.	RRM domain-containing protein.	0.686
GL50803_5942	GL50803_8427	A8BKJ8	A8B657	Polyadenylate-binding protein, putative.	Transcriptional repressor NOT4Hp, putative.	0.585
GL50803_6054	GL50803_3294	A8B3D2	D3KI59	RNA binding putative.	Uncharacterized protein.	0.597
GL50803_6054	GL50803_3993	A8B3D2	A8BKE6	RNA binding putative.	Polyadenylate-binding protein, putative.	0.686
GL50803_6054	GL50803_92031	A8B3D2	A8BU38	RNA binding putative.	RNA binding protein, putative.	0.996
GL50803_6054	GL50803_9803	A8B3D2	A8BQV2	RNA binding putative.	La ribonucleoprotein, putative.	0.569
GL50803_8427	GL50803_5942	A8B657	A8BKJ8	Transcriptional repressor NOT4Hp, putative.	Polyadenylate-binding protein, putative.	0.585
GL50803_92031	GL50803_3294	A8BU38	D3KI59	RNA binding protein, putative.	Uncharacterized protein.	0.549
GL50803_92031	GL50803_3993	A8BU38	A8BKE6	RNA binding protein, putative.	Polyadenylate-binding protein, putative.	0.838
GL50803_92031	GL50803_6054	A8BU38	A8B3D2	RNA binding protein, putative.	RNA binding putative.	0.996
GL50803_9803	GL50803_6054	A8BQV2	A8B3D2	La ribonucleoprotein, putative.	RNA binding putative.	0.569