(15 nodes) (2018) RPGRIP1L helps to establish the ciliary gate for entry of proteins. network (Giardia lamblia ATCC 50803)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GL50803_17478	Dynein heavy chain. (5412 aa)
	GL50803_17432	Heat shock protein 70. (1243 aa)
	GL50803_94440	Dynein heavy chain. (5577 aa)
	GL50803_10538	Dynein heavy chain. (769 aa)
	GL50803_111950	Dynein heavy chain. (5117 aa)
	GL50803_37985	Dynein heavy chain. (1072 aa)
	GL50803_16804	Dynein heavy chain. (2297 aa)
	GL50803_93736	Dynein heavy chain. (4773 aa)
	GL50803_17243	Dynein heavy chain. (1442 aa)
	GL50803_17265	Dynein heavy chain. (2675 aa)
	GL50803_101138	Dynein heavy chain. (5163 aa)
	GL50803_40496	Dynein heavy chain. (4877 aa)
	GL50803_103059	Dynein heavy chain. (2406 aa)
	GL50803_14367	Adenylate cyclase. (642 aa)
	GL50803_8172	Dynein heavy chain. (381 aa)

Your Current Organism:

Giardia lamblia ATCC 50803

NCBI taxonomy Id: 184922
Other names: G. lamblia ATCC 50803, Giardia intestinalis ATCC 50803

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GL50803_101138	GL50803_10538	A8BFS2	A8B9Q2	Dynein heavy chain.	Dynein heavy chain.	0.415
GL50803_101138	GL50803_17265	A8BFS2	A8BL65	Dynein heavy chain.	Dynein heavy chain.	0.418
GL50803_103059	GL50803_10538	A8BVW7	A8B9Q2	Dynein heavy chain.	Dynein heavy chain.	0.949
GL50803_103059	GL50803_17243	A8BVW7	A8BLL2	Dynein heavy chain.	Dynein heavy chain.	0.951
GL50803_103059	GL50803_37985	A8BVW7	A8B7D3	Dynein heavy chain.	Dynein heavy chain.	0.771
GL50803_103059	GL50803_8172	A8BVW7	A8BQQ9	Dynein heavy chain.	Dynein heavy chain.	0.937
GL50803_10538	GL50803_101138	A8B9Q2	A8BFS2	Dynein heavy chain.	Dynein heavy chain.	0.415
GL50803_10538	GL50803_103059	A8B9Q2	A8BVW7	Dynein heavy chain.	Dynein heavy chain.	0.949
GL50803_10538	GL50803_16804	A8B9Q2	A8B2B7	Dynein heavy chain.	Dynein heavy chain.	0.958
GL50803_10538	GL50803_17243	A8B9Q2	A8BLL2	Dynein heavy chain.	Dynein heavy chain.	0.950
GL50803_10538	GL50803_17265	A8B9Q2	A8BL65	Dynein heavy chain.	Dynein heavy chain.	0.579
GL50803_10538	GL50803_8172	A8B9Q2	A8BQQ9	Dynein heavy chain.	Dynein heavy chain.	0.956
GL50803_16804	GL50803_10538	A8B2B7	A8B9Q2	Dynein heavy chain.	Dynein heavy chain.	0.958
GL50803_16804	GL50803_17243	A8B2B7	A8BLL2	Dynein heavy chain.	Dynein heavy chain.	0.934
GL50803_16804	GL50803_17265	A8B2B7	A8BL65	Dynein heavy chain.	Dynein heavy chain.	0.948
GL50803_16804	GL50803_37985	A8B2B7	A8B7D3	Dynein heavy chain.	Dynein heavy chain.	0.843
GL50803_16804	GL50803_8172	A8B2B7	A8BQQ9	Dynein heavy chain.	Dynein heavy chain.	0.881
GL50803_17243	GL50803_103059	A8BLL2	A8BVW7	Dynein heavy chain.	Dynein heavy chain.	0.951
GL50803_17243	GL50803_10538	A8BLL2	A8B9Q2	Dynein heavy chain.	Dynein heavy chain.	0.950
GL50803_17243	GL50803_16804	A8BLL2	A8B2B7	Dynein heavy chain.	Dynein heavy chain.	0.934