(27 nodes) Spliceosome network (Giardia lamblia ATCC 50803)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GL50803_17126	PSP domain-containing protein. (309 aa)
	GL50803_22112	U6 snRNA-associated Sm-like protein LSm3, putative. (126 aa)
	GL50803_11186	RNA binding protein, putative. (273 aa)
	GL50803_25011	Splicing factor 3B subunit, putative. (190 aa)
	GL50803_6625	Uncharacterized protein. (318 aa)
	GL50803_15500	Uncharacterized protein. (143 aa)
	GL50803_12119	SnRNP Sm-like protein, putative. (95 aa)
	GL50803_9259	Uncharacterized protein. (196 aa)
	GL50803_13464	Splicesome-associated protein. (463 aa)
	GL50803_88765	Cytosolic HSP70; Belongs to the heat shock protein 70 family. (664 aa)
	GL50803_16806	RNA-dependent helicase p68, putative. (608 aa)
	GL50803_32531	Uncharacterized protein. (88 aa)
	GL50803_4954	Small nuclear ribonucleoprotein F, putative. (107 aa)
	GL50803_17497	RNA-dependent helicase p68, putative. (748 aa)
	GL50803_16554	Splicing factor U2AF subunit, putative. (193 aa)
	GL50803_2825	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (122 aa)
	GL50803_10755	Splicing factor 3A subunit 2. (222 aa)
	GL50803_5938	Myb 1-like protein. (265 aa)
	GL50803_11287	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (122 aa)
	GL50803_6408	SnRNP Sm-like protein, putative. (125 aa)
	GL50803_2597	SnRNP Sm-like protein, putative. (85 aa)
	GL50803_16376	ATP-dependent RNA helicase p47, putative. (516 aa)
	GL50803_18713	U6 snRNA-associated Sm-like protein LSm2, putative. (107 aa)
	GL50803_112114	Splicing factor-like protein, putative. (2309 aa)
	GL50803_19815	C2H2-type domain-containing protein. (123 aa)
	GL50803_12164	Small nuclear ribonucleoprotein Sm D3, putative. (90 aa)
	GL50803_221690	Small nuclear ribonucleoprotein Sm D3, putative. (62 aa)

Your Current Organism:

Giardia lamblia ATCC 50803

NCBI taxonomy Id: 184922
Other names: G. lamblia ATCC 50803, Giardia intestinalis ATCC 50803

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GL50803_10755	GL50803_112114	A8BJH8	A8BTS5	Splicing factor 3A subunit 2.	Splicing factor-like protein, putative.	0.999
GL50803_10755	GL50803_11287	A8BJH8	A8BMJ0	Splicing factor 3A subunit 2.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.679
GL50803_10755	GL50803_12164	A8BJH8	A8BZP8	Splicing factor 3A subunit 2.	Small nuclear ribonucleoprotein Sm D3, putative.	0.999
GL50803_10755	GL50803_13464	A8BJH8	A8BBX4	Splicing factor 3A subunit 2.	Splicesome-associated protein.	0.999
GL50803_10755	GL50803_15500	A8BJH8	A8B8S6	Splicing factor 3A subunit 2.	Uncharacterized protein.	0.840
GL50803_10755	GL50803_16376	A8BJH8	A8BS28	Splicing factor 3A subunit 2.	ATP-dependent RNA helicase p47, putative.	0.449
GL50803_10755	GL50803_16554	A8BJH8	A8BIY1	Splicing factor 3A subunit 2.	Splicing factor U2AF subunit, putative.	0.540
GL50803_10755	GL50803_16806	A8BJH8	A8BDK8	Splicing factor 3A subunit 2.	RNA-dependent helicase p68, putative.	0.404
GL50803_10755	GL50803_17126	A8BJH8	A8B446	Splicing factor 3A subunit 2.	PSP domain-containing protein.	0.999
GL50803_10755	GL50803_17497	A8BJH8	A8BFN7	Splicing factor 3A subunit 2.	RNA-dependent helicase p68, putative.	0.404
GL50803_10755	GL50803_18713	A8BJH8	A8BT30	Splicing factor 3A subunit 2.	U6 snRNA-associated Sm-like protein LSm2, putative.	0.964
GL50803_10755	GL50803_22112	A8BJH8	A8B4P7	Splicing factor 3A subunit 2.	U6 snRNA-associated Sm-like protein LSm3, putative.	0.928
GL50803_10755	GL50803_221690	A8BJH8	A8BZR3	Splicing factor 3A subunit 2.	Small nuclear ribonucleoprotein Sm D3, putative.	0.540
GL50803_10755	GL50803_25011	A8BJH8	A8B7X6	Splicing factor 3A subunit 2.	Splicing factor 3B subunit, putative.	0.999
GL50803_10755	GL50803_2597	A8BJH8	A8BQC4	Splicing factor 3A subunit 2.	SnRNP Sm-like protein, putative.	0.540
GL50803_10755	GL50803_2825	A8BJH8	A8BJG3	Splicing factor 3A subunit 2.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.679
GL50803_10755	GL50803_32531	A8BJH8	A8BE26	Splicing factor 3A subunit 2.	Uncharacterized protein.	0.999
GL50803_10755	GL50803_4954	A8BJH8	A8BEC2	Splicing factor 3A subunit 2.	Small nuclear ribonucleoprotein F, putative.	0.999
GL50803_10755	GL50803_6408	A8BJH8	A8BQ97	Splicing factor 3A subunit 2.	SnRNP Sm-like protein, putative.	0.540
GL50803_10755	GL50803_9259	A8BJH8	A8BAJ9	Splicing factor 3A subunit 2.	Uncharacterized protein.	0.653