(17 nodes) Nucleotide excision repair network (Giardia lamblia ATCC 50803)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GL50803_24636	Replication factor C, subunit 3. (321 aa)
	GL50803_13512	TFIIH P34. (279 aa)
	GL50803_15000	TFIIH P44. (406 aa)
	GL50803_16127	Replication factor C, subunit 5. (373 aa)
	GL50803_9287	Replication factor C, sub 2. (351 aa)
	GL50803_35094	DNA polymerase. (1329 aa)
	GL50803_23064	DNA polymerase epsilon, catalytic subunit. (2590 aa)
	GL50803_14553	CCAAT-binding transcription factor subunit C. (114 aa)
	GL50803_6564	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (299 aa)
	GL50803_10775	Uncharacterized protein. (450 aa)
	GL50803_87205	DNA repair and recombination protein Rhp26p. (930 aa)
	GL50803_15392	Replication factor C, subunit 1. (890 aa)
	GL50803_16512	DNA repair helicase TFIIH P90. (765 aa)
	GL50803_14095	Replication factor C, subunit 4. (322 aa)
	GL50803_3706	DNA pol epsilon, sub B. (542 aa)
	GL50803_7649	DNA ligase. (810 aa)
	GL50803_4328	TFIIH basal transcription factor complex helicase subunit. (840 aa)

Your Current Organism:

Giardia lamblia ATCC 50803

NCBI taxonomy Id: 184922
Other names: G. lamblia ATCC 50803, Giardia intestinalis ATCC 50803

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GL50803_10775	GL50803_14095	A8BJK0	A8BRC3	Uncharacterized protein.	Replication factor C, subunit 4.	0.814
GL50803_10775	GL50803_15392	A8BJK0	A8BMF0	Uncharacterized protein.	Replication factor C, subunit 1.	0.760
GL50803_10775	GL50803_16127	A8BJK0	A8BBJ5	Uncharacterized protein.	Replication factor C, subunit 5.	0.835
GL50803_10775	GL50803_23064	A8BJK0	A8BDM4	Uncharacterized protein.	DNA polymerase epsilon, catalytic subunit.	0.985
GL50803_10775	GL50803_24636	A8BJK0	A8B3E2	Uncharacterized protein.	Replication factor C, subunit 3.	0.798
GL50803_10775	GL50803_35094	A8BJK0	A8BCF5	Uncharacterized protein.	DNA polymerase.	0.999
GL50803_10775	GL50803_3706	A8BJK0	A8BUB9	Uncharacterized protein.	DNA pol epsilon, sub B.	0.540
GL50803_10775	GL50803_4328	A8BJK0	A8BYS3	Uncharacterized protein.	TFIIH basal transcription factor complex helicase subunit.	0.455
GL50803_10775	GL50803_6564	A8BJK0	A8BIU1	Uncharacterized protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.999
GL50803_10775	GL50803_7649	A8BJK0	A8BWV4	Uncharacterized protein.	DNA ligase.	0.922
GL50803_10775	GL50803_9287	A8BJK0	A8BBR2	Uncharacterized protein.	Replication factor C, sub 2.	0.891
GL50803_13512	GL50803_15000	A8B6C2	A8BAS0	TFIIH P34.	TFIIH P44.	0.540
GL50803_13512	GL50803_16512	A8B6C2	A8BMI7	TFIIH P34.	DNA repair helicase TFIIH P90.	0.540
GL50803_14095	GL50803_10775	A8BRC3	A8BJK0	Replication factor C, subunit 4.	Uncharacterized protein.	0.814
GL50803_14095	GL50803_15000	A8BRC3	A8BAS0	Replication factor C, subunit 4.	TFIIH P44.	0.466
GL50803_14095	GL50803_15392	A8BRC3	A8BMF0	Replication factor C, subunit 4.	Replication factor C, subunit 1.	0.999
GL50803_14095	GL50803_16127	A8BRC3	A8BBJ5	Replication factor C, subunit 4.	Replication factor C, subunit 5.	0.999
GL50803_14095	GL50803_16512	A8BRC3	A8BMI7	Replication factor C, subunit 4.	DNA repair helicase TFIIH P90.	0.500
GL50803_14095	GL50803_23064	A8BRC3	A8BDM4	Replication factor C, subunit 4.	DNA polymerase epsilon, catalytic subunit.	0.844
GL50803_14095	GL50803_24636	A8BRC3	A8B3E2	Replication factor C, subunit 4.	Replication factor C, subunit 3.	0.999