(13 nodes) Mismatch repair network (Giardia lamblia ATCC 50803)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GL50803_24636	Replication factor C, subunit 3. (321 aa)
	GL50803_34058	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (1106 aa)
	GL50803_16127	Replication factor C, subunit 5. (373 aa)
	GL50803_9287	Replication factor C, sub 2. (351 aa)
	GL50803_35094	DNA polymerase. (1329 aa)
	GL50803_6564	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (299 aa)
	GL50803_10775	Uncharacterized protein. (450 aa)
	GL50803_15392	Replication factor C, subunit 1. (890 aa)
	GL50803_9922	Exonuclease 1. (705 aa)
	GL50803_14095	Replication factor C, subunit 4. (322 aa)
	GL50803_16149	Mlh1-like protein. (786 aa)
	GL50803_7649	DNA ligase. (810 aa)
	GL50803_113252	Msh2-like protein. (963 aa)

Your Current Organism:

Giardia lamblia ATCC 50803

NCBI taxonomy Id: 184922
Other names: G. lamblia ATCC 50803, Giardia intestinalis ATCC 50803

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GL50803_10775	GL50803_14095	A8BJK0	A8BRC3	Uncharacterized protein.	Replication factor C, subunit 4.	0.814
GL50803_10775	GL50803_15392	A8BJK0	A8BMF0	Uncharacterized protein.	Replication factor C, subunit 1.	0.760
GL50803_10775	GL50803_16127	A8BJK0	A8BBJ5	Uncharacterized protein.	Replication factor C, subunit 5.	0.835
GL50803_10775	GL50803_24636	A8BJK0	A8B3E2	Uncharacterized protein.	Replication factor C, subunit 3.	0.798
GL50803_10775	GL50803_35094	A8BJK0	A8BCF5	Uncharacterized protein.	DNA polymerase.	0.999
GL50803_10775	GL50803_6564	A8BJK0	A8BIU1	Uncharacterized protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.999
GL50803_10775	GL50803_7649	A8BJK0	A8BWV4	Uncharacterized protein.	DNA ligase.	0.922
GL50803_10775	GL50803_9287	A8BJK0	A8BBR2	Uncharacterized protein.	Replication factor C, sub 2.	0.891
GL50803_10775	GL50803_9922	A8BJK0	A8BQ11	Uncharacterized protein.	Exonuclease 1.	0.723
GL50803_113252	GL50803_14095	E2RTP5	A8BRC3	Msh2-like protein.	Replication factor C, subunit 4.	0.568
GL50803_113252	GL50803_15392	E2RTP5	A8BMF0	Msh2-like protein.	Replication factor C, subunit 1.	0.495
GL50803_113252	GL50803_16127	E2RTP5	A8BBJ5	Msh2-like protein.	Replication factor C, subunit 5.	0.535
GL50803_113252	GL50803_16149	E2RTP5	A8BWU9	Msh2-like protein.	Mlh1-like protein.	0.981
GL50803_113252	GL50803_24636	E2RTP5	A8B3E2	Msh2-like protein.	Replication factor C, subunit 3.	0.433
GL50803_113252	GL50803_34058	E2RTP5	A8B6C1	Msh2-like protein.	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.999
GL50803_113252	GL50803_35094	E2RTP5	A8BCF5	Msh2-like protein.	DNA polymerase.	0.835
GL50803_113252	GL50803_6564	E2RTP5	A8BIU1	Msh2-like protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.961
GL50803_113252	GL50803_7649	E2RTP5	A8BWV4	Msh2-like protein.	DNA ligase.	0.551
GL50803_113252	GL50803_9287	E2RTP5	A8BBR2	Msh2-like protein.	Replication factor C, sub 2.	0.746
GL50803_113252	GL50803_9922	E2RTP5	A8BQ11	Msh2-like protein.	Exonuclease 1.	0.994