(6 nodes) Mixed, incl. Potassium uptake protein TrkA, and Domain of unknown function DUF4190 network (Streptomyces sp. SAT1)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ANH93709.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (247 aa)
	ANH93710.1	DUF4190 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (169 aa)
	ANH93926.1	Potassium transporter TrkA; Derived by automated computational analysis using gene prediction method: Protein Homology. (226 aa)
	ANH93927.1	Potassium transporter TrkA; Derived by automated computational analysis using gene prediction method: Protein Homology. (223 aa)
	ANH93928.1	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (692 aa)
	ANH93929.1	RNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. (464 aa)

Your Current Organism:

Streptomyces sp. SAT1

NCBI taxonomy Id: 1849967
Other names: S. sp. SAT1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANH93709.1	ANH93710.1	A8713_23155	A8713_23160	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DUF4190 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.566
ANH93710.1	ANH93709.1	A8713_23160	A8713_23155	DUF4190 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.566
ANH93926.1	ANH93927.1	A8713_24420	A8713_24425	Potassium transporter TrkA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Potassium transporter TrkA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.943
ANH93926.1	ANH93928.1	A8713_24420	A8713_24430	Potassium transporter TrkA; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.866
ANH93926.1	ANH93929.1	A8713_24420	A8713_24435	Potassium transporter TrkA; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	0.561
ANH93927.1	ANH93926.1	A8713_24425	A8713_24420	Potassium transporter TrkA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Potassium transporter TrkA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.943
ANH93927.1	ANH93928.1	A8713_24425	A8713_24430	Potassium transporter TrkA; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.853
ANH93927.1	ANH93929.1	A8713_24425	A8713_24435	Potassium transporter TrkA; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	0.561
ANH93928.1	ANH93926.1	A8713_24430	A8713_24420	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Potassium transporter TrkA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.866
ANH93928.1	ANH93927.1	A8713_24430	A8713_24425	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Potassium transporter TrkA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.853
ANH93928.1	ANH93929.1	A8713_24430	A8713_24435	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	0.754
ANH93929.1	ANH93926.1	A8713_24435	A8713_24420	RNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	Potassium transporter TrkA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.561
ANH93929.1	ANH93927.1	A8713_24435	A8713_24425	RNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	Potassium transporter TrkA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.561
ANH93929.1	ANH93928.1	A8713_24435	A8713_24430	RNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.754