(11 nodes) Mixed, incl. D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain, and Haloacid dehalogenase-like hydrolase network (Rhodobacter sp. LPB0142)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AOZ68566.1	D-glycerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (345 aa)
	AOZ68662.1	Glyoxylate/hydroxypyruvate reductase A; Derived by automated computational analysis using gene prediction method: Protein Homology. (311 aa)
	AOZ68681.1	D-glycerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (314 aa)
	AOZ69775.1	Haloacid dehalogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (221 aa)
	AOZ71038.1	Glycerate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (414 aa)
	AOZ69916.1	Phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (233 aa)
	AOZ69917.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (92 aa)
	AOZ70243.1	HAD family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (221 aa)
	AOZ70479.1	2-hydroxy-acid oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (427 aa)
	AOZ71103.1	2-hydroxy-acid oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (355 aa)
	AOZ70480.1	FAD-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (478 aa)

Your Current Organism:

Rhodobacter sp. LPB0142

NCBI taxonomy Id: 1850250
Other names: R. sp. LPB0142

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AOZ68566.1	AOZ68662.1	LPB142_03910	LPB142_04470	D-glycerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	Glyoxylate/hydroxypyruvate reductase A; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.924
AOZ68566.1	AOZ68681.1	LPB142_03910	LPB142_04590	D-glycerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	D-glycerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.906
AOZ68566.1	AOZ69775.1	LPB142_03910	LPB142_10960	D-glycerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	Haloacid dehalogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.902
AOZ68566.1	AOZ69916.1	LPB142_03910	LPB142_11765	D-glycerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	Phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.902
AOZ68566.1	AOZ70243.1	LPB142_03910	LPB142_13705	D-glycerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	HAD family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.915
AOZ68566.1	AOZ70479.1	LPB142_03910	LPB142_15000	D-glycerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	2-hydroxy-acid oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.908
AOZ68566.1	AOZ70480.1	LPB142_03910	LPB142_15010	D-glycerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	FAD-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.914
AOZ68566.1	AOZ71038.1	LPB142_03910	LPB142_11645	D-glycerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	Glycerate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.946
AOZ68566.1	AOZ71103.1	LPB142_03910	LPB142_15005	D-glycerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	2-hydroxy-acid oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.914
AOZ68662.1	AOZ68566.1	LPB142_04470	LPB142_03910	Glyoxylate/hydroxypyruvate reductase A; Derived by automated computational analysis using gene prediction method: Protein Homology.	D-glycerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.924
AOZ68662.1	AOZ68681.1	LPB142_04470	LPB142_04590	Glyoxylate/hydroxypyruvate reductase A; Derived by automated computational analysis using gene prediction method: Protein Homology.	D-glycerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.926
AOZ68662.1	AOZ69775.1	LPB142_04470	LPB142_10960	Glyoxylate/hydroxypyruvate reductase A; Derived by automated computational analysis using gene prediction method: Protein Homology.	Haloacid dehalogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.906
AOZ68662.1	AOZ69916.1	LPB142_04470	LPB142_11765	Glyoxylate/hydroxypyruvate reductase A; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.917
AOZ68662.1	AOZ70243.1	LPB142_04470	LPB142_13705	Glyoxylate/hydroxypyruvate reductase A; Derived by automated computational analysis using gene prediction method: Protein Homology.	HAD family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.906
AOZ68662.1	AOZ70479.1	LPB142_04470	LPB142_15000	Glyoxylate/hydroxypyruvate reductase A; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-hydroxy-acid oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.901
AOZ68662.1	AOZ70480.1	LPB142_04470	LPB142_15010	Glyoxylate/hydroxypyruvate reductase A; Derived by automated computational analysis using gene prediction method: Protein Homology.	FAD-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.906
AOZ68662.1	AOZ71038.1	LPB142_04470	LPB142_11645	Glyoxylate/hydroxypyruvate reductase A; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycerate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.909
AOZ68662.1	AOZ71103.1	LPB142_04470	LPB142_15005	Glyoxylate/hydroxypyruvate reductase A; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-hydroxy-acid oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.906
AOZ68681.1	AOZ68566.1	LPB142_04590	LPB142_03910	D-glycerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	D-glycerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.906
AOZ68681.1	AOZ68662.1	LPB142_04590	LPB142_04470	D-glycerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	Glyoxylate/hydroxypyruvate reductase A; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.926