(38 nodes) Mixed, incl. glycerol-3-phosphate transmembrane transport, and ABC-type carbohydrate transporter activity network (Rhodobacter sp. LPB0142)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AOZ67987.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (83 aa)
	AOZ67988.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (383 aa)
	AOZ70788.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (557 aa)
	AOZ67990.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (90 aa)
	AOZ67991.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (267 aa)
	AOZ67992.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (290 aa)
	AOZ67993.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (359 aa)
	AOZ67994.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (363 aa)
	AOZ68437.1	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (341 aa)
	AOZ68438.1	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (434 aa)
	AOZ68439.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (289 aa)
	AOZ68440.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (276 aa)
	AOZ68441.1	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (334 aa)
	AOZ68442.1	Converts D-sorbitol to L-sorbose; Derived by automated computational analysis using gene prediction method: Protein Homology. (257 aa)
	AOZ68443.1	Mannitol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (491 aa)
	AOZ68444.1	Carbohydrate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (308 aa)
	AOZ68445.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (437 aa)
	AOZ68446.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1037 aa)
	AOZ68447.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (184 aa)
	AOZ68448.1	Nucleotidyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (484 aa)
	dnaE2	Error-prone DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. (1102 aa)
	AOZ68450.1	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (589 aa)
	AOZ68451.1	FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (599 aa)
	AOZ68452.1	Butanediol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (350 aa)
	AOZ69460.1	Beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (446 aa)
	AOZ69461.1	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (343 aa)
	AOZ70983.1	Alpha-glucoside ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (451 aa)
	AOZ69462.1	Alpha-glucoside ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (331 aa)
	AOZ69463.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (377 aa)
	AOZ69464.1	Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (547 aa)
	AOZ69465.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (361 aa)
	AOZ70987.1	Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (528 aa)
	AOZ69976.1	Endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (334 aa)
	ugpC	Sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; Part of the ABC transporter complex UgpABCE involved in sn- glycerol-3-phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. sn-glycerol-3- phosphate importer (TC 3.A.1.1.3) family. (362 aa)
	ugpE	Glycerol-3-phosphate ABC transporter permease; Part of the binding-protein-dependent transport system for sn-glycerol-3-phosphate; probably responsible for the translocation of the substrate across the membrane. (280 aa)
	AOZ69979.1	Glycerol-3-phosphate transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (311 aa)
	AOZ69980.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (432 aa)
	AOZ69981.1	Class II histone deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (366 aa)

Your Current Organism:

Rhodobacter sp. LPB0142

NCBI taxonomy Id: 1850250
Other names: R. sp. LPB0142

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AOZ67987.1	AOZ67988.1	LPB142_00500	LPB142_00505	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.617
AOZ67987.1	AOZ70788.1	LPB142_00500	LPB142_00515	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.495
AOZ67988.1	AOZ67987.1	LPB142_00505	LPB142_00500	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.617
AOZ67988.1	AOZ67990.1	LPB142_00505	LPB142_00520	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.498
AOZ67988.1	AOZ67991.1	LPB142_00505	LPB142_00525	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.402
AOZ67988.1	AOZ67992.1	LPB142_00505	LPB142_00530	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.402
AOZ67988.1	AOZ67993.1	LPB142_00505	LPB142_00535	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.515
AOZ67988.1	AOZ67994.1	LPB142_00505	LPB142_00540	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.518
AOZ67988.1	AOZ70788.1	LPB142_00505	LPB142_00515	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.626
AOZ67990.1	AOZ67988.1	LPB142_00520	LPB142_00505	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.498
AOZ67990.1	AOZ67991.1	LPB142_00520	LPB142_00525	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.969
AOZ67990.1	AOZ67992.1	LPB142_00520	LPB142_00530	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.954
AOZ67990.1	AOZ67993.1	LPB142_00520	LPB142_00535	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.950
AOZ67990.1	AOZ67994.1	LPB142_00520	LPB142_00540	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.947
AOZ67990.1	AOZ70788.1	LPB142_00520	LPB142_00515	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.943
AOZ67991.1	AOZ67988.1	LPB142_00525	LPB142_00505	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.402
AOZ67991.1	AOZ67990.1	LPB142_00525	LPB142_00520	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.969
AOZ67991.1	AOZ67992.1	LPB142_00525	LPB142_00530	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
AOZ67991.1	AOZ67993.1	LPB142_00525	LPB142_00535	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.994
AOZ67991.1	AOZ67994.1	LPB142_00525	LPB142_00540	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.994