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rnr rnr groL_1 groL_1 groL_2 groL_2 rho rho pfp_1 pfp_1 dnaK_1 dnaK_1 cca cca rny rny dnaK_2 dnaK_2 recQ_1 recQ_1 rne rne groL_3 groL_3 eno eno recQ_2 recQ_2 rhlE rhlE pnp pnp
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rnrRibonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. (736 aa)
groL_1Stress protein H5; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. (538 aa)
groL_2Stress protein H5; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. (566 aa)
rhoTranscription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. (595 aa)
pfp_1Pyrophosphate--fructose 6-phosphate 1-phosphotransferase. (448 aa)
dnaK_1Heat shock protein 70. (503 aa)
ccaCCA-adding enzyme; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. (413 aa)
rnyRibonuclease Y; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family. (527 aa)
dnaK_2Heat shock protein 70; Acts as a chaperone; Belongs to the heat shock protein 70 family. (641 aa)
recQ_1ATP-dependent DNA helicase RecQ. (610 aa)
rneRibonuclease E. (508 aa)
groL_3Stress protein H5; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. (539 aa)
enoEnolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family. (434 aa)
recQ_2ATP-dependent DNA helicase RecQ. (706 aa)
rhlEATP-dependent RNA helicase RhlE; Belongs to the DEAD box helicase family. (473 aa)
pnpPolyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. (714 aa)
Your Current Organism:
Limihaloglobus sulfuriphilus
NCBI taxonomy Id: 1851148
Other names: DSM 100118, JCM 31927, KCTC 15601, L. sulfuriphilus, Limihaloglobus sulfuriphilus Pradel et al., Phycisphaerae bacterium SM-Chi-D1, strain SM-Chi-D1
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