(25 nodes) Mixed, incl. Type II secretion system (T2SS), protein F, and Negative regulation by symbiont of host apoptotic process network (Orrella dioscoreae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ODI_02054	Ring canal kelch-like protein. (341 aa)
	ODI_02055	Hypothetical protein. (107 aa)
	ODI_02056	Type II/IV secretion system protein TadC, associated with Flp pilus assembly. (278 aa)
	ODI_02057	Flp pilus assembly protein TadB. (281 aa)
	ODI_02058	Type II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily. (603 aa)
	ODI_02059	Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly; Belongs to the bacterial secretin family. (450 aa)
	ODI_02060	Flp pilus assembly protein RcpC/CpaB. (288 aa)
	ODI_02061	Hypothetical protein. (159 aa)
	ODI_02062	Hypothetical protein. (229 aa)
	ODI_02063	Putative exported protein. (437 aa)
	ODI_02064	Putative membrane protein. (93 aa)
	ODI_02983	Probable transmembrane protein. (690 aa)
	ODI_02984	Hypothetical protein. (78 aa)
	ODI_02985	Flp pilus assembly protein TadD, contains TPR repeats. (311 aa)
	ODI_02986	Type II/IV secretion system protein TadC, associated with Flp pilus assembly. (336 aa)
	ODI_02987	Flp pilus assembly protein TadB. (308 aa)
	ODI_02988	Type II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily. (449 aa)
	ODI_02989	Flp pilus assembly protein, ATPase CpaE. (439 aa)
	ODI_02990	Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly; Belongs to the bacterial secretin family. (456 aa)
	ODI_02991	Flp pilus assembly protein RcpC/CpaB. (313 aa)
	ODI_02992	Hypothetical protein. (153 aa)
	ODI_02993	Flp pilus assembly protein TadG. (155 aa)
	ODI_02994	PROBABLE PREPILIN PEPTIDASE TRANSMEMBRANE PROTEIN. (157 aa)
	ODI_02995	Flp/Fap pilin component. (76 aa)
	ODI_02996	Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s). (270 aa)

Your Current Organism:

Orrella dioscoreae

NCBI taxonomy Id: 1851544
Other names: Alcaligenaceae bacterium LMG 29303, CIP 111009, LMG 29303, LMG:29303, O. dioscoreae

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ODI_02054	ODI_02055	Ring canal kelch-like protein.	Hypothetical protein.	0.539
ODI_02054	ODI_02056	Ring canal kelch-like protein.	Type II/IV secretion system protein TadC, associated with Flp pilus assembly.	0.513
ODI_02055	ODI_02054	Hypothetical protein.	Ring canal kelch-like protein.	0.539
ODI_02055	ODI_02056	Hypothetical protein.	Type II/IV secretion system protein TadC, associated with Flp pilus assembly.	0.937
ODI_02055	ODI_02057	Hypothetical protein.	Flp pilus assembly protein TadB.	0.894
ODI_02055	ODI_02058	Hypothetical protein.	Type II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily.	0.883
ODI_02055	ODI_02059	Hypothetical protein.	Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly; Belongs to the bacterial secretin family.	0.744
ODI_02055	ODI_02060	Hypothetical protein.	Flp pilus assembly protein RcpC/CpaB.	0.836
ODI_02055	ODI_02061	Hypothetical protein.	Hypothetical protein.	0.467
ODI_02055	ODI_02063	Hypothetical protein.	Putative exported protein.	0.588
ODI_02055	ODI_02064	Hypothetical protein.	Putative membrane protein.	0.742
ODI_02055	ODI_02986	Hypothetical protein.	Type II/IV secretion system protein TadC, associated with Flp pilus assembly.	0.406
ODI_02055	ODI_02988	Hypothetical protein.	Type II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily.	0.634
ODI_02055	ODI_02991	Hypothetical protein.	Flp pilus assembly protein RcpC/CpaB.	0.476
ODI_02056	ODI_02054	Type II/IV secretion system protein TadC, associated with Flp pilus assembly.	Ring canal kelch-like protein.	0.513
ODI_02056	ODI_02055	Type II/IV secretion system protein TadC, associated with Flp pilus assembly.	Hypothetical protein.	0.937
ODI_02056	ODI_02057	Type II/IV secretion system protein TadC, associated with Flp pilus assembly.	Flp pilus assembly protein TadB.	0.910
ODI_02056	ODI_02058	Type II/IV secretion system protein TadC, associated with Flp pilus assembly.	Type II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily.	0.948
ODI_02056	ODI_02059	Type II/IV secretion system protein TadC, associated with Flp pilus assembly.	Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly; Belongs to the bacterial secretin family.	0.889
ODI_02056	ODI_02060	Type II/IV secretion system protein TadC, associated with Flp pilus assembly.	Flp pilus assembly protein RcpC/CpaB.	0.942