8 items (Orrella dioscoreae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ugpE	Glycerol-3-phosphate ABC transporter, permease protein UgpE (TC 3.A.1.1.3); Part of the binding-protein-dependent transport system for sn-glycerol-3-phosphate; probably responsible for the translocation of the substrate across the membrane. (282 aa)
	ODI_02880	L-proline glycine betaine ABC transport system permease protein ProV (TC 3.A.1.12.1). (423 aa)
	ODI_03152	Sugar ABC transporter, permease protein. (280 aa)
	ODI_03216	Methionine ABC transporter permease protein. (218 aa)
	ODI_03221	Methionine ABC transporter permease protein. (221 aa)
	ODI_03722	Methionine ABC transporter permease protein. (217 aa)
	ODI_04055	Glycerol-3-phosphate ABC transporter, permease protein UgpE (TC 3.A.1.1.3). (266 aa)
	ODI_04290	Methionine ABC transporter permease protein. (220 aa)

Your Current Organism:

Orrella dioscoreae

NCBI taxonomy Id: 1851544
Other names: Alcaligenaceae bacterium LMG 29303, CIP 111009, LMG 29303, LMG:29303, O. dioscoreae

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ODI_03216	ODI_03221	ODI_03216	ODI_03221	Methionine ABC transporter permease protein.	Methionine ABC transporter permease protein.	0.562
ODI_03221	ODI_03216	ODI_03221	ODI_03216	Methionine ABC transporter permease protein.	Methionine ABC transporter permease protein.	0.562
ODI_04055	ugpE	ODI_04055	ODI_00449	Glycerol-3-phosphate ABC transporter, permease protein UgpE (TC 3.A.1.1.3).	Glycerol-3-phosphate ABC transporter, permease protein UgpE (TC 3.A.1.1.3); Part of the binding-protein-dependent transport system for sn-glycerol-3-phosphate; probably responsible for the translocation of the substrate across the membrane.	0.922
ugpE	ODI_04055	ODI_00449	ODI_04055	Glycerol-3-phosphate ABC transporter, permease protein UgpE (TC 3.A.1.1.3); Part of the binding-protein-dependent transport system for sn-glycerol-3-phosphate; probably responsible for the translocation of the substrate across the membrane.	Glycerol-3-phosphate ABC transporter, permease protein UgpE (TC 3.A.1.1.3).	0.922