STRINGSTRING
ODI_00095 ODI_00095 ODI_00164 ODI_00164 ODI_00198 ODI_00198 ODI_00234 ODI_00234 ODI_00361 ODI_00361 ODI_00521 ODI_00521 fbp fbp serC serC ODI_00705 ODI_00705 eno eno acsA acsA ppc ppc ODI_01240 ODI_01240 ODI_01292 ODI_01292 ODI_01324 ODI_01324 ODI_01592 ODI_01592 ODI_02244 ODI_02244 ODI_02246 ODI_02246 ODI_02247 ODI_02247 ODI_02248 ODI_02248 ackA ackA ODI_02318 ODI_02318 glyA glyA mdh mdh ODI_03439 ODI_03439 ODI_03757 ODI_03757 ODI_03758 ODI_03758 ODI_03798 ODI_03798 ODI_04089 ODI_04089 ODI_04144 ODI_04144 gpmA gpmA ODI_04353 ODI_04353
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ODI_00095S-(hydroxymethyl)glutathione dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily. (375 aa)
ODI_00164D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (346 aa)
ODI_00198D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (324 aa)
ODI_00234D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (337 aa)
ODI_00361Hypothetical, related to broad specificity phosphatases COG0406. (219 aa)
ODI_00521D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (334 aa)
fbpFructose-1,6-bisphosphatase, type I; Belongs to the FBPase class 1 family. (338 aa)
serCPhosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily. (380 aa)
ODI_00705Acetyl-coenzyme A synthetase. (564 aa)
enoEnolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family. (428 aa)
acsAAcetyl-coenzyme A synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family. (659 aa)
ppcPhosphoenolpyruvate carboxylase; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle; Belongs to the PEPCase type 1 family. (953 aa)
ODI_01240Phosphoenolpyruvate synthase; Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate; Belongs to the PEP-utilizing enzyme family. (776 aa)
ODI_01292D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (351 aa)
ODI_01324Hydroxypyruvate reductase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (327 aa)
ODI_01592D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (318 aa)
ODI_02244NAD-dependent formate dehydrogenase delta subunit. (82 aa)
ODI_02246NAD-dependent formate dehydrogenase alpha subunit. (958 aa)
ODI_02247NAD-dependent formate dehydrogenase beta subunit. (534 aa)
ODI_02248NAD-dependent formate dehydrogenase gamma subunit. (190 aa)
ackAAcetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family. (411 aa)
ODI_02318Phosphoserine phosphatase. (285 aa)
glyASerine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. (414 aa)
mdhMalate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family. (329 aa)
ODI_03439D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (306 aa)
ODI_03757Formate dehydrogenase N gamma subunit. (220 aa)
ODI_03758Formate dehydrogenase O beta subunit. (308 aa)
ODI_03798Fructose-bisphosphate aldolase class II; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis. (354 aa)
ODI_04089S-formylglutathione hydrolase; Serine hydrolase involved in the detoxification of formaldehyde. (281 aa)
ODI_04144D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (312 aa)
gpmAPhosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily. (250 aa)
ODI_04353D-3-phosphoglycerate dehydrogenase. (399 aa)
Your Current Organism:
Orrella dioscoreae
NCBI taxonomy Id: 1851544
Other names: Alcaligenaceae bacterium LMG 29303, CIP 111009, LMG 29303, LMG:29303, O. dioscoreae
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