(18 nodes) Mixed, incl. Phenol-containing compound catabolic process, and HTH-type transcriptional repressor NicS, C-terminal network (Pseudomonas silesiensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ANJ54172.1	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (225 aa)
	ANJ55934.1	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (221 aa)
	ANJ56246.1	LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family. (402 aa)
	ANJ56491.1	NAD-dependent dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (272 aa)
	ANJ56492.1	Gluconolactonase; Derived by automated computational analysis using gene prediction method: Protein Homology. (297 aa)
	ANJ56496.1	Aldose epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (290 aa)
	PMA3_18980	Threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (244 aa)
	ANJ57118.1	4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (238 aa)
	ANJ57119.1	4-oxalomesaconate tautomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (363 aa)
	ANJ57121.1	2-pyrone-4,6-dicarboxylate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (287 aa)
	ANJ57143.1	Porin; Derived by automated computational analysis using gene prediction method: Protein Homology. (417 aa)
	ANJ57144.1	Damage-inducible protein CinA; Derived by automated computational analysis using gene prediction method: Protein Homology. (434 aa)
	ANJ57145.1	Sodium:dicarboxylate symporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family. (439 aa)
	ANJ57146.1	Isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (360 aa)
	ANJ57147.1	LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family. (296 aa)
	ANJ58447.1	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (222 aa)
	ANJ58448.1	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (220 aa)
	ANJ58449.1	Dimethylmenaquinone methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (212 aa)

Your Current Organism:

Pseudomonas silesiensis

NCBI taxonomy Id: 1853130
Other names: DSM 103370, P. silesiensis, PCM 2856, Pseudomonas silesiensis Kaminski et al. 2018, Pseudomonas sp. A3(2016), strain A3

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANJ54172.1	ANJ57118.1	PMA3_02955	PMA3_18985	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.454
ANJ54172.1	ANJ57121.1	PMA3_02955	PMA3_19000	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-pyrone-4,6-dicarboxylate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.485
ANJ54172.1	PMA3_18980	PMA3_02955	PMA3_18980	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.488
ANJ56246.1	ANJ57118.1	PMA3_14285	PMA3_18985	LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.	4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.673
ANJ56246.1	ANJ57119.1	PMA3_14285	PMA3_18990	LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.	4-oxalomesaconate tautomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.620
ANJ56246.1	ANJ57121.1	PMA3_14285	PMA3_19000	LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.	2-pyrone-4,6-dicarboxylate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.604
ANJ56246.1	ANJ57146.1	PMA3_14285	PMA3_19165	LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.	Isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.538
ANJ56246.1	PMA3_18980	PMA3_14285	PMA3_18980	LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.	Threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.739
ANJ56491.1	ANJ56492.1	PMA3_15595	PMA3_15600	NAD-dependent dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Gluconolactonase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.802
ANJ56491.1	ANJ56496.1	PMA3_15595	PMA3_15620	NAD-dependent dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aldose epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.420
ANJ56491.1	ANJ57121.1	PMA3_15595	PMA3_19000	NAD-dependent dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-pyrone-4,6-dicarboxylate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.467
ANJ56492.1	ANJ56491.1	PMA3_15600	PMA3_15595	Gluconolactonase; Derived by automated computational analysis using gene prediction method: Protein Homology.	NAD-dependent dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.802
ANJ56492.1	ANJ56496.1	PMA3_15600	PMA3_15620	Gluconolactonase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aldose epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.600
ANJ56496.1	ANJ56491.1	PMA3_15620	PMA3_15595	Aldose epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	NAD-dependent dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.420
ANJ56496.1	ANJ56492.1	PMA3_15620	PMA3_15600	Aldose epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Gluconolactonase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.600
ANJ57118.1	ANJ54172.1	PMA3_18985	PMA3_02955	4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.454
ANJ57118.1	ANJ56246.1	PMA3_18985	PMA3_14285	4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.	0.673
ANJ57118.1	ANJ57119.1	PMA3_18985	PMA3_18990	4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	4-oxalomesaconate tautomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.949
ANJ57118.1	ANJ57121.1	PMA3_18985	PMA3_19000	4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-pyrone-4,6-dicarboxylate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.862
ANJ57118.1	ANJ57146.1	PMA3_18985	PMA3_19165	4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773