(11 nodes) Mixed, incl. Cytochrome c, class IE, and Respiratory chain complex IV assembly network (Pseudomonas silesiensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ANJ53623.1	Cytochrome c oxidase assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (211 aa)
	cyoE	Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. (299 aa)
	ANJ53625.1	Derived by automated computational analysis using gene prediction method: Protein Homology. (359 aa)
	ANJ53626.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (197 aa)
	ANJ53627.1	Cytochrome oxidase biogenesis protein Surf1,facilitates heme A insertion; Derived by automated computational analysis using gene prediction method: Protein Homology. (246 aa)
	ANJ53630.1	Cytochrome C oxidase assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (183 aa)
	ANJ55867.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (72 aa)
	ANJ59340.1	Derived by automated computational analysis using gene prediction method: Protein Homology. (214 aa)
	ANJ59480.1	Derived by automated computational analysis using gene prediction method: Protein Homology. (135 aa)
	ANJ59239.1	Derived by automated computational analysis using gene prediction method: Protein Homology. (203 aa)
	ANJ59240.1	Cytochrome; Derived by automated computational analysis using gene prediction method: Protein Homology. (96 aa)

Your Current Organism:

Pseudomonas silesiensis

NCBI taxonomy Id: 1853130
Other names: DSM 103370, P. silesiensis, PCM 2856, Pseudomonas silesiensis Kaminski et al. 2018, Pseudomonas sp. A3(2016), strain A3

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANJ53623.1	ANJ53625.1	PMA3_00065	PMA3_00075	Cytochrome c oxidase assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.920
ANJ53623.1	ANJ53626.1	PMA3_00065	PMA3_00080	Cytochrome c oxidase assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.843
ANJ53623.1	ANJ53627.1	PMA3_00065	PMA3_00085	Cytochrome c oxidase assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome oxidase biogenesis protein Surf1,facilitates heme A insertion; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.901
ANJ53623.1	ANJ53630.1	PMA3_00065	PMA3_00100	Cytochrome c oxidase assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome C oxidase assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.721
ANJ53623.1	ANJ59239.1	PMA3_00065	PMA3_30320	Cytochrome c oxidase assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.422
ANJ53623.1	cyoE	PMA3_00065	PMA3_00070	Cytochrome c oxidase assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.	0.880
ANJ53625.1	ANJ53623.1	PMA3_00075	PMA3_00065	Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome c oxidase assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.920
ANJ53625.1	ANJ53626.1	PMA3_00075	PMA3_00080	Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.976
ANJ53625.1	ANJ53627.1	PMA3_00075	PMA3_00085	Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome oxidase biogenesis protein Surf1,facilitates heme A insertion; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
ANJ53625.1	ANJ53630.1	PMA3_00075	PMA3_00100	Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome C oxidase assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
ANJ53625.1	ANJ55867.1	PMA3_00075	PMA3_12225	Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.609
ANJ53625.1	ANJ59239.1	PMA3_00075	PMA3_30320	Derived by automated computational analysis using gene prediction method: Protein Homology.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.557
ANJ53625.1	ANJ59240.1	PMA3_00075	PMA3_30325	Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.543
ANJ53625.1	ANJ59340.1	PMA3_00075	PMA3_12515	Derived by automated computational analysis using gene prediction method: Protein Homology.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.423
ANJ53625.1	ANJ59480.1	PMA3_00075	PMA3_29375	Derived by automated computational analysis using gene prediction method: Protein Homology.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.657
ANJ53625.1	cyoE	PMA3_00075	PMA3_00070	Derived by automated computational analysis using gene prediction method: Protein Homology.	Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.	0.998
ANJ53626.1	ANJ53623.1	PMA3_00080	PMA3_00065	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome c oxidase assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.843
ANJ53626.1	ANJ53625.1	PMA3_00080	PMA3_00075	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.976
ANJ53626.1	ANJ53627.1	PMA3_00080	PMA3_00085	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome oxidase biogenesis protein Surf1,facilitates heme A insertion; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.977
ANJ53626.1	ANJ53630.1	PMA3_00080	PMA3_00100	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome C oxidase assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.890