(12 nodes) Mixed, incl. Two-component regulatory system, and 7TMR-DISM extracellular 2 network (Pseudomonas silesiensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ANJ53722.1	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (121 aa)
	ANJ54057.1	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (374 aa)
	ANJ54131.1	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (794 aa)
	ANJ54728.1	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (240 aa)
	ANJ54729.1	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (474 aa)
	ANJ56529.1	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (433 aa)
	ANJ56530.1	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (233 aa)
	ANJ56850.1	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (482 aa)
	ANJ56868.1	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (183 aa)
	ANJ57668.1	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (225 aa)
	ANJ57670.1	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (446 aa)
	ANJ59113.1	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (303 aa)

Your Current Organism:

Pseudomonas silesiensis

NCBI taxonomy Id: 1853130
Other names: DSM 103370, P. silesiensis, PCM 2856, Pseudomonas silesiensis Kaminski et al. 2018, Pseudomonas sp. A3(2016), strain A3

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANJ53722.1	ANJ54057.1	PMA3_00600	PMA3_02370	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.808
ANJ53722.1	ANJ54131.1	PMA3_00600	PMA3_02745	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.663
ANJ53722.1	ANJ54729.1	PMA3_00600	PMA3_05930	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.817
ANJ53722.1	ANJ56529.1	PMA3_00600	PMA3_15785	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.841
ANJ53722.1	ANJ56850.1	PMA3_00600	PMA3_17530	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.752
ANJ53722.1	ANJ56868.1	PMA3_00600	PMA3_17625	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.748
ANJ53722.1	ANJ57670.1	PMA3_00600	PMA3_21905	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.806
ANJ53722.1	ANJ59113.1	PMA3_00600	PMA3_29660	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.680
ANJ54057.1	ANJ53722.1	PMA3_02370	PMA3_00600	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.808
ANJ54057.1	ANJ54131.1	PMA3_02370	PMA3_02745	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.646
ANJ54057.1	ANJ54728.1	PMA3_02370	PMA3_05925	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.814
ANJ54057.1	ANJ54729.1	PMA3_02370	PMA3_05930	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.716
ANJ54057.1	ANJ56529.1	PMA3_02370	PMA3_15785	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.757
ANJ54057.1	ANJ56530.1	PMA3_02370	PMA3_15790	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.772
ANJ54057.1	ANJ56850.1	PMA3_02370	PMA3_17530	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.659
ANJ54057.1	ANJ56868.1	PMA3_02370	PMA3_17625	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.738
ANJ54057.1	ANJ57668.1	PMA3_02370	PMA3_21895	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.737
ANJ54057.1	ANJ57670.1	PMA3_02370	PMA3_21905	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.617
ANJ54057.1	ANJ59113.1	PMA3_02370	PMA3_29660	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.723
ANJ54131.1	ANJ53722.1	PMA3_02745	PMA3_00600	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.663