(19 nodes) Deaminase activity network (Pseudomonas silesiensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ANJ56714.1	Riboflavin biosynthesis protein RibD; Derived by automated computational analysis using gene prediction method: Protein Homology. (224 aa)
	ANJ53746.1	D-cysteine desulfhydrase; Derived by automated computational analysis using gene prediction method: Protein Homology. (330 aa)
	ANJ53796.1	Cytosine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology. (413 aa)
	ANJ54150.1	Enamine deaminase RidA; Derived by automated computational analysis using gene prediction method: Protein Homology. (141 aa)
	ANJ54238.1	Laccase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the multicopper oxidase YfiH/RL5 family. (239 aa)
	ANJ54283.1	Competence protein TfoX; Derived by automated computational analysis using gene prediction method: Protein Homology. (90 aa)
	dcd	Deoxycytidine triphosphate deaminase; Catalyzes the deamination of dCTP to dUTP. (188 aa)
	ANJ55139.1	1-aminocyclopropane-1-carboxylate deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology. (309 aa)
	ANJ55841.1	Cytosine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology. (398 aa)
	ANJ55886.1	Reactive intermediate/imine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology. (129 aa)
	ANJ56015.1	D-cysteine desulfhydrase; Derived by automated computational analysis using gene prediction method: Protein Homology. (343 aa)
	ANJ57303.1	Cytosine deaminase; Catalyzes the deamination of cytosine to uracil and ammonia; Derived by automated computational analysis using gene prediction method: Protein Homology. (415 aa)
	ANJ57376.1	Guanine deaminase; Catalyzes the hydrolytic deamination of guanine, producing xanthine and ammonia; Belongs to the metallo-dependent hydrolases superfamily. ATZ/TRZ family. (434 aa)
	mtaD	N-ethylammeline chlorohydrolase; Catalyzes the deamination of 5-methylthioadenosine and S- adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L- homocysteine, respectively. Is also able to deaminate adenosine. Belongs to the metallo-dependent hydrolases superfamily. MTA/SAH deaminase family. (444 aa)
	tadA	tRNA-specific adenosine deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family. (165 aa)
	ANJ58422.1	8-oxoguanine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology. (452 aa)
	ANJ58507.1	Adenosine deaminase; Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism. (317 aa)
	ANJ58597.1	Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. (377 aa)
	ANJ59090.1	Reactive intermediate/imine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology. (126 aa)

Your Current Organism:

Pseudomonas silesiensis

NCBI taxonomy Id: 1853130
Other names: DSM 103370, P. silesiensis, PCM 2856, Pseudomonas silesiensis Kaminski et al. 2018, Pseudomonas sp. A3(2016), strain A3

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANJ55841.1	ANJ57303.1	PMA3_12075	PMA3_19970	Cytosine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytosine deaminase; Catalyzes the deamination of cytosine to uracil and ammonia; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.926
ANJ56714.1	ANJ58597.1	PMA3_16780	PMA3_26945	Riboflavin biosynthesis protein RibD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.	0.785
ANJ57303.1	ANJ55841.1	PMA3_19970	PMA3_12075	Cytosine deaminase; Catalyzes the deamination of cytosine to uracil and ammonia; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytosine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.926
ANJ58597.1	ANJ56714.1	PMA3_26945	PMA3_16780	Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.	Riboflavin biosynthesis protein RibD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.785