Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ANJ53772.1 | ANJ57682.1 | PMA3_00855 | PMA3_21965 | Recombinase RecQ; Derived by automated computational analysis using gene prediction method: Protein Homology. | ATP-dependent DNA helicase RecQ; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.923 |
| ANJ54424.1 | ANJ59103.1 | PMA3_04320 | PMA3_29610 | Dipicolinate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial histone-like protein family. | Integration host factor; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | 0.811 |
| ANJ54424.1 | ihfA | PMA3_04320 | PMA3_09375 | Dipicolinate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial histone-like protein family. | Integration host factor subunit alpha; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | 0.849 |
| ANJ55133.1 | ihfA | PMA3_08150 | PMA3_09375 | DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | Integration host factor subunit alpha; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | 0.575 |
| ANJ57363.1 | recR | PMA3_20270 | PMA3_07470 | Nucleoid-associated protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.966 |
| ANJ57682.1 | ANJ53772.1 | PMA3_21965 | PMA3_00855 | ATP-dependent DNA helicase RecQ; Derived by automated computational analysis using gene prediction method: Protein Homology. | Recombinase RecQ; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.923 |
| ANJ58359.1 | recF | PMA3_25570 | PMA3_30080 | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | DNA replication/repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family. | 0.532 |
| ANJ58359.1 | recO | PMA3_25570 | PMA3_04380 | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.418 |
| ANJ58359.1 | recR | PMA3_25570 | PMA3_07470 | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.507 |
| ANJ59103.1 | ANJ54424.1 | PMA3_29610 | PMA3_04320 | Integration host factor; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | Dipicolinate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial histone-like protein family. | 0.811 |
| ANJ59103.1 | ihfA | PMA3_29610 | PMA3_09375 | Integration host factor; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | Integration host factor subunit alpha; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | 0.563 |
| ihfA | ANJ54424.1 | PMA3_09375 | PMA3_04320 | Integration host factor subunit alpha; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | Dipicolinate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial histone-like protein family. | 0.849 |
| ihfA | ANJ55133.1 | PMA3_09375 | PMA3_08150 | Integration host factor subunit alpha; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | 0.575 |
| ihfA | ANJ59103.1 | PMA3_09375 | PMA3_29610 | Integration host factor subunit alpha; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | Integration host factor; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | 0.563 |
| recF | ANJ58359.1 | PMA3_30080 | PMA3_25570 | DNA replication/repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family. | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | 0.532 |
| recF | recO | PMA3_30080 | PMA3_04380 | DNA replication/repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family. | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.569 |
| recF | recR | PMA3_30080 | PMA3_07470 | DNA replication/repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family. | Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.723 |
| recO | ANJ58359.1 | PMA3_04380 | PMA3_25570 | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | 0.418 |
| recO | recF | PMA3_04380 | PMA3_30080 | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | DNA replication/repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family. | 0.569 |
| recO | recR | PMA3_04380 | PMA3_07470 | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.913 |
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