(6 nodes) Intradiol ring-cleavage dioxygenase, C-terminal network (Pseudomonas silesiensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ANJ57876.1	Intradiol ring-cleavage dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (241 aa)
	ANJ55635.1	Catechol 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (309 aa)
	ANJ55431.1	Protocatechuate 3,4-dioxygenase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology. (239 aa)
	ANJ55430.1	Protocatechuate 3,4-dioxygenase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology. (200 aa)
	ANJ54634.1	Protocatechuate 3,4-dioxygenase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology. (188 aa)
	ANJ54633.1	Protocatechuate 3,4-dioxygenase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology. (234 aa)

Your Current Organism:

Pseudomonas silesiensis

NCBI taxonomy Id: 1853130
Other names: DSM 103370, P. silesiensis, PCM 2856, Pseudomonas silesiensis Kaminski et al. 2018, Pseudomonas sp. A3(2016), strain A3

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANJ54633.1	ANJ54634.1	PMA3_05400	PMA3_05405	Protocatechuate 3,4-dioxygenase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protocatechuate 3,4-dioxygenase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
ANJ54633.1	ANJ55430.1	PMA3_05400	PMA3_09855	Protocatechuate 3,4-dioxygenase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protocatechuate 3,4-dioxygenase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.823
ANJ54634.1	ANJ54633.1	PMA3_05405	PMA3_05400	Protocatechuate 3,4-dioxygenase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protocatechuate 3,4-dioxygenase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
ANJ54634.1	ANJ55431.1	PMA3_05405	PMA3_09860	Protocatechuate 3,4-dioxygenase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protocatechuate 3,4-dioxygenase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.840
ANJ54634.1	ANJ55635.1	PMA3_05405	PMA3_10960	Protocatechuate 3,4-dioxygenase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Catechol 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.630
ANJ55430.1	ANJ54633.1	PMA3_09855	PMA3_05400	Protocatechuate 3,4-dioxygenase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protocatechuate 3,4-dioxygenase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.823
ANJ55430.1	ANJ55431.1	PMA3_09855	PMA3_09860	Protocatechuate 3,4-dioxygenase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protocatechuate 3,4-dioxygenase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
ANJ55430.1	ANJ55635.1	PMA3_09855	PMA3_10960	Protocatechuate 3,4-dioxygenase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Catechol 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.636
ANJ55431.1	ANJ54634.1	PMA3_09860	PMA3_05405	Protocatechuate 3,4-dioxygenase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protocatechuate 3,4-dioxygenase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.840
ANJ55431.1	ANJ55430.1	PMA3_09860	PMA3_09855	Protocatechuate 3,4-dioxygenase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protocatechuate 3,4-dioxygenase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
ANJ55635.1	ANJ54634.1	PMA3_10960	PMA3_05405	Catechol 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protocatechuate 3,4-dioxygenase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.630
ANJ55635.1	ANJ55430.1	PMA3_10960	PMA3_09855	Catechol 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protocatechuate 3,4-dioxygenase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.636