(14 nodes) Pyridoxal-phosphate dependent enzyme network (Pseudomonas silesiensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	trpB	Tryptophan synthase subunit beta; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine. (411 aa)
	ANJ53746.1	D-cysteine desulfhydrase; Derived by automated computational analysis using gene prediction method: Protein Homology. (330 aa)
	ANJ54457.1	Threonine synthase; Catalyzes the formation of L-threonine from O-phospho-L-homoserine; Derived by automated computational analysis using gene prediction method: Protein Homology. (469 aa)
	ANJ54609.1	Cysteine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (364 aa)
	ANJ54731.1	Cysteine synthase B; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cysteine synthase/cystathionine beta- synthase family. (300 aa)
	ANJ55139.1	1-aminocyclopropane-1-carboxylate deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology. (309 aa)
	ANJ55392.1	Threonine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (467 aa)
	ANJ55589.1	Pyridoxal-5'-phosphate-dependent protein subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology. (309 aa)
	ANJ56015.1	D-cysteine desulfhydrase; Derived by automated computational analysis using gene prediction method: Protein Homology. (343 aa)
	ANJ59364.1	PLP-dependent lyase/thiolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (377 aa)
	ANJ56704.1	Cystathionine beta-synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (458 aa)
	ANJ56969.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (318 aa)
	ANJ57729.1	Cysteine synthase A; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cysteine synthase/cystathionine beta- synthase family. (324 aa)
	ANJ58487.1	Threonine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (462 aa)

Your Current Organism:

Pseudomonas silesiensis

NCBI taxonomy Id: 1853130
Other names: DSM 103370, P. silesiensis, PCM 2856, Pseudomonas silesiensis Kaminski et al. 2018, Pseudomonas sp. A3(2016), strain A3

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANJ54457.1	ANJ55392.1	PMA3_04490	PMA3_09620	Threonine synthase; Catalyzes the formation of L-threonine from O-phospho-L-homoserine; Derived by automated computational analysis using gene prediction method: Protein Homology.	Threonine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.906
ANJ54457.1	ANJ55589.1	PMA3_04490	PMA3_10720	Threonine synthase; Catalyzes the formation of L-threonine from O-phospho-L-homoserine; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pyridoxal-5'-phosphate-dependent protein subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.947
ANJ54457.1	ANJ56969.1	PMA3_04490	PMA3_18160	Threonine synthase; Catalyzes the formation of L-threonine from O-phospho-L-homoserine; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.935
ANJ54457.1	ANJ58487.1	PMA3_04490	PMA3_26365	Threonine synthase; Catalyzes the formation of L-threonine from O-phospho-L-homoserine; Derived by automated computational analysis using gene prediction method: Protein Homology.	Threonine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.907
ANJ54609.1	ANJ56704.1	PMA3_05275	PMA3_16725	Cysteine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cystathionine beta-synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.834
ANJ54609.1	ANJ57729.1	PMA3_05275	PMA3_22235	Cysteine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cysteine synthase A; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cysteine synthase/cystathionine beta- synthase family.	0.908
ANJ54731.1	ANJ55589.1	PMA3_05940	PMA3_10720	Cysteine synthase B; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cysteine synthase/cystathionine beta- synthase family.	Pyridoxal-5'-phosphate-dependent protein subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.482
ANJ55392.1	ANJ54457.1	PMA3_09620	PMA3_04490	Threonine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Threonine synthase; Catalyzes the formation of L-threonine from O-phospho-L-homoserine; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.906
ANJ55392.1	ANJ55589.1	PMA3_09620	PMA3_10720	Threonine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pyridoxal-5'-phosphate-dependent protein subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.948
ANJ55392.1	ANJ56969.1	PMA3_09620	PMA3_18160	Threonine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.935
ANJ55392.1	ANJ58487.1	PMA3_09620	PMA3_26365	Threonine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Threonine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.910
ANJ55589.1	ANJ54457.1	PMA3_10720	PMA3_04490	Pyridoxal-5'-phosphate-dependent protein subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	Threonine synthase; Catalyzes the formation of L-threonine from O-phospho-L-homoserine; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.947
ANJ55589.1	ANJ54731.1	PMA3_10720	PMA3_05940	Pyridoxal-5'-phosphate-dependent protein subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cysteine synthase B; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cysteine synthase/cystathionine beta- synthase family.	0.482
ANJ55589.1	ANJ55392.1	PMA3_10720	PMA3_09620	Pyridoxal-5'-phosphate-dependent protein subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	Threonine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.948
ANJ55589.1	ANJ56704.1	PMA3_10720	PMA3_16725	Pyridoxal-5'-phosphate-dependent protein subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cystathionine beta-synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.945
ANJ55589.1	ANJ56969.1	PMA3_10720	PMA3_18160	Pyridoxal-5'-phosphate-dependent protein subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.925
ANJ55589.1	ANJ58487.1	PMA3_10720	PMA3_26365	Pyridoxal-5'-phosphate-dependent protein subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	Threonine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.949
ANJ55589.1	trpB	PMA3_10720	PMA3_00215	Pyridoxal-5'-phosphate-dependent protein subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	Tryptophan synthase subunit beta; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.	0.928
ANJ56704.1	ANJ54609.1	PMA3_16725	PMA3_05275	Cystathionine beta-synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cysteine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.834
ANJ56704.1	ANJ55589.1	PMA3_16725	PMA3_10720	Cystathionine beta-synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pyridoxal-5'-phosphate-dependent protein subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.945