(16 nodes) PAS fold-4, and PAS fold network (Bradyrhizobium sp. Ghvi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SFN95924.1	PAS domain S-box-containing protein. (741 aa)
	SFN78342.1	Na+/proline symporter. (1169 aa)
	SFN88899.1	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein. (355 aa)
	SFO20411.1	PAS fold-containing protein. (776 aa)
	SFO58773.1	Signal transduction histidine kinase. (449 aa)
	SFO68216.1	PAS domain S-box-containing protein. (926 aa)
	SFO71886.1	PAS domain S-box-containing protein. (800 aa)
	SFO66275.1	Cell cycle control histidine kinase CckA. (860 aa)
	SFO73987.1	PAS domain S-box-containing protein. (895 aa)
	SFO75538.1	PAS domain S-box-containing protein. (824 aa)
	SFO75633.1	PAS domain S-box-containing protein. (513 aa)
	SFO81604.1	PAS domain S-box-containing protein. (758 aa)
	SFO95748.1	Regulatory protein, luxR family. (308 aa)
	SFO95779.1	Signal transduction histidine kinase. (1123 aa)
	SFP52205.1	PAS domain S-box-containing protein. (1067 aa)
	SFP95195.1	Signal transduction histidine kinase regulating C4-dicarboxylate transport system. (742 aa)

Your Current Organism:

Bradyrhizobium sp. Ghvi

NCBI taxonomy Id: 1855319
Other names: B. sp. Ghvi

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SFN78342.1	SFN88899.1	SAMN05216330_101546	SAMN05216330_101842	Na+/proline symporter.	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	0.998
SFN78342.1	SFN95924.1	SAMN05216330_101546	SAMN05216330_1011066	Na+/proline symporter.	PAS domain S-box-containing protein.	0.997
SFN78342.1	SFO20411.1	SAMN05216330_101546	SAMN05216330_102202	Na+/proline symporter.	PAS fold-containing protein.	0.997
SFN78342.1	SFO58773.1	SAMN05216330_101546	SAMN05216330_103760	Na+/proline symporter.	Signal transduction histidine kinase.	0.986
SFN78342.1	SFO66275.1	SAMN05216330_101546	SAMN05216330_10433	Na+/proline symporter.	Cell cycle control histidine kinase CckA.	0.997
SFN78342.1	SFO68216.1	SAMN05216330_101546	SAMN05216330_104151	Na+/proline symporter.	PAS domain S-box-containing protein.	0.997
SFN78342.1	SFO71886.1	SAMN05216330_101546	SAMN05216330_104325	Na+/proline symporter.	PAS domain S-box-containing protein.	0.997
SFN78342.1	SFO73987.1	SAMN05216330_101546	SAMN05216330_104436	Na+/proline symporter.	PAS domain S-box-containing protein.	0.999
SFN78342.1	SFO75538.1	SAMN05216330_101546	SAMN05216330_104517	Na+/proline symporter.	PAS domain S-box-containing protein.	0.998
SFN78342.1	SFO75633.1	SAMN05216330_101546	SAMN05216330_104522	Na+/proline symporter.	PAS domain S-box-containing protein.	0.998
SFN78342.1	SFO81604.1	SAMN05216330_101546	SAMN05216330_104791	Na+/proline symporter.	PAS domain S-box-containing protein.	0.999
SFN78342.1	SFO95748.1	SAMN05216330_101546	SAMN05216330_105136	Na+/proline symporter.	Regulatory protein, luxR family.	0.990
SFN78342.1	SFO95779.1	SAMN05216330_101546	SAMN05216330_105137	Na+/proline symporter.	Signal transduction histidine kinase.	0.979
SFN78342.1	SFP52205.1	SAMN05216330_101546	SAMN05216330_1087	Na+/proline symporter.	PAS domain S-box-containing protein.	0.997
SFN78342.1	SFP95195.1	SAMN05216330_101546	SAMN05216330_112157	Na+/proline symporter.	Signal transduction histidine kinase regulating C4-dicarboxylate transport system.	0.995
SFN88899.1	SFN78342.1	SAMN05216330_101842	SAMN05216330_101546	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	Na+/proline symporter.	0.998
SFN88899.1	SFN95924.1	SAMN05216330_101842	SAMN05216330_1011066	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	PAS domain S-box-containing protein.	0.999
SFN88899.1	SFO20411.1	SAMN05216330_101842	SAMN05216330_102202	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	PAS fold-containing protein.	0.999
SFN88899.1	SFO58773.1	SAMN05216330_101842	SAMN05216330_103760	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	Signal transduction histidine kinase.	0.976
SFN88899.1	SFO66275.1	SAMN05216330_101842	SAMN05216330_10433	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	Cell cycle control histidine kinase CckA.	0.996