(51 nodes) PAS domain network (Bradyrhizobium sp. Ghvi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SFN87571.1	Methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor. (558 aa)
	SFN88547.1	Diguanylate cyclase (GGDEF) domain-containing protein. (578 aa)
	SFN88585.1	Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding Fis domains. (480 aa)
	SFN88869.1	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein. (1036 aa)
	SFN88899.1	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein. (355 aa)
	SFN91831.1	PAS fold. (834 aa)
	SFO20411.1	PAS fold-containing protein. (776 aa)
	SFO20889.1	PAS domain S-box-containing protein. (660 aa)
	SFO21834.1	Diguanylate cyclase (GGDEF) domain-containing protein. (923 aa)
	SFO46510.1	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein. (958 aa)
	SFO50122.1	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein. (878 aa)
	SFO53886.1	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein. (747 aa)
	SFO56108.1	PAS domain S-box-containing protein. (346 aa)
	SFO59862.1	PAS domain S-box-containing protein. (1203 aa)
	SFO68216.1	PAS domain S-box-containing protein. (926 aa)
	SFO70168.1	PAS domain S-box-containing protein. (564 aa)
	SFO70865.1	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein. (820 aa)
	SFO71886.1	PAS domain S-box-containing protein. (800 aa)
	SFO66275.1	Cell cycle control histidine kinase CckA. (860 aa)
	SFO73987.1	PAS domain S-box-containing protein. (895 aa)
	SFO75538.1	PAS domain S-box-containing protein. (824 aa)
	SFO75633.1	PAS domain S-box-containing protein. (513 aa)
	SFO81604.1	PAS domain S-box-containing protein. (758 aa)
	SFO67168.1	PAS domain S-box-containing protein. (644 aa)
	SFP00150.1	PAS/PAC sensor signal transduction histidine kinase. (505 aa)
	SFP05444.1	PAS domain S-box-containing protein. (172 aa)
	SFP08356.1	Two-component system, cell cycle sensor histidine kinase DivJ. (613 aa)
	SFP11010.1	Two-component system, cell cycle sensor histidine kinase PleC. (776 aa)
	SFP28704.1	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein. (634 aa)
	SFP39950.1	PAS domain S-box-containing protein. (494 aa)
	SFP40404.1	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein. (617 aa)
	SFP47106.1	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein. (634 aa)
	SFP55380.1	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein. (705 aa)
	SFP55474.1	PAS domain-containing protein. (331 aa)
	SFP59872.1	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein. (898 aa)
	SFP52205.1	PAS domain S-box-containing protein. (1067 aa)
	SFP66311.1	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein. (917 aa)
	SFP78695.1	PAS domain S-box-containing protein. (409 aa)
	SFP84917.1	Multi-sensor signal transduction histidine kinase. (804 aa)
	SFP85010.1	Signal transduction histidine kinase, nitrogen specific, NtrB. (389 aa)
	SFQ11628.1	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein. (882 aa)
	SFQ15635.1	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein. (799 aa)
	SFQ26192.1	PAS domain S-box-containing protein. (1696 aa)
	SFQ28313.1	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein. (1026 aa)
	SFN95924.1	PAS domain S-box-containing protein. (741 aa)
	SFN95957.1	PAS domain S-box-containing protein. (656 aa)
	SFN60908.1	PAS domain S-box-containing protein. (891 aa)
	SFN66736.1	PAS domain S-box-containing protein. (513 aa)
	SFN61224.1	PAS domain S-box-containing protein. (1125 aa)
	SFN80634.1	PAS domain S-box-containing protein. (346 aa)
	SFN81328.1	PAS domain S-box-containing protein. (142 aa)

Your Current Organism:

Bradyrhizobium sp. Ghvi

NCBI taxonomy Id: 1855319
Other names: B. sp. Ghvi

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structured XML interaction data, according to the 'PSI-MI' data standard

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SFN60908.1	SFN61224.1	SAMN05216330_10111	SAMN05216330_10124	PAS domain S-box-containing protein.	PAS domain S-box-containing protein.	0.787
SFN60908.1	SFN66736.1	SAMN05216330_10111	SAMN05216330_101182	PAS domain S-box-containing protein.	PAS domain S-box-containing protein.	0.923
SFN60908.1	SFN80634.1	SAMN05216330_10111	SAMN05216330_101619	PAS domain S-box-containing protein.	PAS domain S-box-containing protein.	0.748
SFN60908.1	SFN87571.1	SAMN05216330_10111	SAMN05216330_101806	PAS domain S-box-containing protein.	Methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor.	0.509
SFN60908.1	SFN88585.1	SAMN05216330_10111	SAMN05216330_101833	PAS domain S-box-containing protein.	Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding Fis domains.	0.669
SFN60908.1	SFN88869.1	SAMN05216330_10111	SAMN05216330_101841	PAS domain S-box-containing protein.	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	0.605
SFN60908.1	SFN88899.1	SAMN05216330_10111	SAMN05216330_101842	PAS domain S-box-containing protein.	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	0.831
SFN60908.1	SFN91831.1	SAMN05216330_10111	SAMN05216330_101939	PAS domain S-box-containing protein.	PAS fold.	0.637
SFN60908.1	SFN95924.1	SAMN05216330_10111	SAMN05216330_1011066	PAS domain S-box-containing protein.	PAS domain S-box-containing protein.	0.990
SFN60908.1	SFN95957.1	SAMN05216330_10111	SAMN05216330_1011067	PAS domain S-box-containing protein.	PAS domain S-box-containing protein.	0.990
SFN60908.1	SFO20411.1	SAMN05216330_10111	SAMN05216330_102202	PAS domain S-box-containing protein.	PAS fold-containing protein.	0.990
SFN60908.1	SFO20889.1	SAMN05216330_10111	SAMN05216330_102221	PAS domain S-box-containing protein.	PAS domain S-box-containing protein.	0.701
SFN60908.1	SFO21834.1	SAMN05216330_10111	SAMN05216330_102257	PAS domain S-box-containing protein.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.605
SFN60908.1	SFO46510.1	SAMN05216330_10111	SAMN05216330_103130	PAS domain S-box-containing protein.	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	0.605
SFN60908.1	SFO53886.1	SAMN05216330_10111	SAMN05216330_103518	PAS domain S-box-containing protein.	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	0.605
SFN60908.1	SFO56108.1	SAMN05216330_10111	SAMN05216330_103630	PAS domain S-box-containing protein.	PAS domain S-box-containing protein.	0.628
SFN60908.1	SFO59862.1	SAMN05216330_10111	SAMN05216330_103815	PAS domain S-box-containing protein.	PAS domain S-box-containing protein.	0.672
SFN60908.1	SFO66275.1	SAMN05216330_10111	SAMN05216330_10433	PAS domain S-box-containing protein.	Cell cycle control histidine kinase CckA.	0.969
SFN60908.1	SFO67168.1	SAMN05216330_10111	SAMN05216330_10492	PAS domain S-box-containing protein.	PAS domain S-box-containing protein.	0.776
SFN60908.1	SFO68216.1	SAMN05216330_10111	SAMN05216330_104151	PAS domain S-box-containing protein.	PAS domain S-box-containing protein.	0.972