(24 nodes) Anti-sigma factor antagonist activity, and Histidine kinase-like ATPase domain network (Streptomyces sp. Ag109O510)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SED79917.1	PAS domain-containing protein. (813 aa)
	SEE05113.1	Anti-sigma B factor antagonist; Belongs to the anti-sigma-factor antagonist family. (126 aa)
	SEE20990.1	Anti-anti-sigma factor. (141 aa)
	SEE21075.1	PAS domain S-box-containing protein. (829 aa)
	SEE23039.1	Hypothetical protein. (201 aa)
	SEE23220.1	Hypothetical protein. (162 aa)
	SEE24391.1	Histidine kinase-like ATPase domain-containing protein. (531 aa)
	SEE31373.1	PAS domain S-box-containing protein. (814 aa)
	SEE39947.1	Anti-anti-sigma factor. (99 aa)
	SEE40191.1	Stage II sporulation protein AA (anti-sigma F factor antagonist); Belongs to the anti-sigma-factor antagonist family. (141 aa)
	SEE46067.1	PAS domain S-box-containing protein. (917 aa)
	SEE56083.1	Anti-anti-sigma factor; Belongs to the anti-sigma-factor antagonist family. (107 aa)
	SEE63236.1	Anti-sigma regulatory factor (Ser/Thr protein kinase). (132 aa)
	SEE65490.1	Anti-sigma regulatory factor (Ser/Thr protein kinase). (160 aa)
	SEE66628.1	PAS domain S-box-containing protein. (815 aa)
	SEE98055.1	Golgi phosphoprotein 3 (GPP34); Manually curated. (250 aa)
	SEF00936.1	Anti-anti-sigma factor; Belongs to the anti-sigma-factor antagonist family. (139 aa)
	SEF05374.1	Serine phosphatase RsbU, regulator of sigma subunit. (749 aa)
	SEF13538.1	Histidine kinase-like ATPase domain-containing protein. (147 aa)
	SEF15554.1	Anti-anti-sigma factor; Belongs to the anti-sigma-factor antagonist family. (121 aa)
	SEF16259.1	Anti-anti-sigma factor; Belongs to the anti-sigma-factor antagonist family. (130 aa)
	SEF16742.1	PAS domain S-box-containing protein. (790 aa)
	SEF17175.1	Serine phosphatase RsbU, regulator of sigma subunit. (713 aa)
	SEF17335.1	PAS domain S-box-containing protein. (817 aa)

Your Current Organism:

Streptomyces sp. Ag109O510

NCBI taxonomy Id: 1855349
Other names: S. sp. Ag109_O5-10, Streptomyces sp. Ag109_O5-10

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SED79917.1	SEE05113.1	SAMN05216533_0584	SAMN05216533_1259	PAS domain-containing protein.	Anti-sigma B factor antagonist; Belongs to the anti-sigma-factor antagonist family.	0.947
SED79917.1	SEE20990.1	SAMN05216533_0584	SAMN05216533_1677	PAS domain-containing protein.	Anti-anti-sigma factor.	0.935
SED79917.1	SEE21075.1	SAMN05216533_0584	SAMN05216533_1679	PAS domain-containing protein.	PAS domain S-box-containing protein.	0.856
SED79917.1	SEE23039.1	SAMN05216533_0584	SAMN05216533_1734	PAS domain-containing protein.	Hypothetical protein.	0.935
SED79917.1	SEE23220.1	SAMN05216533_0584	SAMN05216533_1738	PAS domain-containing protein.	Hypothetical protein.	0.935
SED79917.1	SEE24391.1	SAMN05216533_0584	SAMN05216533_1770	PAS domain-containing protein.	Histidine kinase-like ATPase domain-containing protein.	0.864
SED79917.1	SEE31373.1	SAMN05216533_0584	SAMN05216533_1944	PAS domain-containing protein.	PAS domain S-box-containing protein.	0.855
SED79917.1	SEE39947.1	SAMN05216533_0584	SAMN05216533_2189	PAS domain-containing protein.	Anti-anti-sigma factor.	0.935
SED79917.1	SEE40191.1	SAMN05216533_0584	SAMN05216533_2196	PAS domain-containing protein.	Stage II sporulation protein AA (anti-sigma F factor antagonist); Belongs to the anti-sigma-factor antagonist family.	0.966
SED79917.1	SEE46067.1	SAMN05216533_0584	SAMN05216533_2378	PAS domain-containing protein.	PAS domain S-box-containing protein.	0.935
SED79917.1	SEE56083.1	SAMN05216533_0584	SAMN05216533_2729	PAS domain-containing protein.	Anti-anti-sigma factor; Belongs to the anti-sigma-factor antagonist family.	0.943
SED79917.1	SEE63236.1	SAMN05216533_0584	SAMN05216533_3010	PAS domain-containing protein.	Anti-sigma regulatory factor (Ser/Thr protein kinase).	0.923
SED79917.1	SEE65490.1	SAMN05216533_0584	SAMN05216533_3112	PAS domain-containing protein.	Anti-sigma regulatory factor (Ser/Thr protein kinase).	0.852
SED79917.1	SEE66628.1	SAMN05216533_0584	SAMN05216533_3162	PAS domain-containing protein.	PAS domain S-box-containing protein.	0.852
SED79917.1	SEE98055.1	SAMN05216533_0584	SAMN05216533_4871	PAS domain-containing protein.	Golgi phosphoprotein 3 (GPP34); Manually curated.	0.935
SED79917.1	SEF00936.1	SAMN05216533_0584	SAMN05216533_5134	PAS domain-containing protein.	Anti-anti-sigma factor; Belongs to the anti-sigma-factor antagonist family.	0.973
SED79917.1	SEF05374.1	SAMN05216533_0584	SAMN05216533_5619	PAS domain-containing protein.	Serine phosphatase RsbU, regulator of sigma subunit.	0.859
SED79917.1	SEF13538.1	SAMN05216533_0584	SAMN05216533_6822	PAS domain-containing protein.	Histidine kinase-like ATPase domain-containing protein.	0.922
SED79917.1	SEF15554.1	SAMN05216533_0584	SAMN05216533_7439	PAS domain-containing protein.	Anti-anti-sigma factor; Belongs to the anti-sigma-factor antagonist family.	0.956
SED79917.1	SEF16259.1	SAMN05216533_0584	SAMN05216533_7753	PAS domain-containing protein.	Anti-anti-sigma factor; Belongs to the anti-sigma-factor antagonist family.	0.944