Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| LuPra_00557 | LuPra_00721 | LuPra_00557 | LuPra_00721 | Outer membrane receptor for ferrienterochelin and colicins. | LamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate. | 0.803 |
| LuPra_00557 | kdgR_1 | LuPra_00557 | LuPra_04676 | Outer membrane receptor for ferrienterochelin and colicins. | Pectin degradation repressor protein KdgR. | 0.519 |
| LuPra_00557 | kdgR_2 | LuPra_00557 | LuPra_05018 | Outer membrane receptor for ferrienterochelin and colicins. | Transcriptional regulator KdgR. | 0.519 |
| LuPra_00557 | kipI | LuPra_00557 | LuPra_04204 | Outer membrane receptor for ferrienterochelin and colicins. | Sporulation inhibitor KipI. | 0.972 |
| LuPra_00721 | LuPra_00557 | LuPra_00721 | LuPra_00557 | LamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate. | Outer membrane receptor for ferrienterochelin and colicins. | 0.803 |
| LuPra_00721 | gdhB_3 | LuPra_00721 | LuPra_05671 | LamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate. | NAD-specific glutamate dehydrogenase. | 0.801 |
| LuPra_00721 | ggt_1 | LuPra_00721 | LuPra_00406 | LamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate. | Gamma-glutamyltranspeptidase. | 0.900 |
| LuPra_00721 | ggt_2 | LuPra_00721 | LuPra_01071 | LamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate. | Gamma-glutamyltranspeptidase. | 0.900 |
| LuPra_00721 | ggt_4 | LuPra_00721 | LuPra_05588 | LamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate. | Gamma-glutamyltranspeptidase. | 0.900 |
| LuPra_00721 | glnA_1 | LuPra_00721 | LuPra_03568 | LamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate. | Glutamine synthetase; Belongs to the glutamine synthetase family. | 0.800 |
| LuPra_00721 | glnA_2 | LuPra_00721 | LuPra_06186 | LamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate. | Glutamine synthetase. | 0.802 |
| LuPra_00721 | glsA1 | LuPra_00721 | LuPra_04344 | LamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate. | Glutaminase; Belongs to the glutaminase family. | 0.800 |
| LuPra_00721 | gltB_1 | LuPra_00721 | LuPra_05558 | LamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate. | Glutamate synthase [NADPH] small chain. | 0.800 |
| LuPra_00721 | gltB_2 | LuPra_00721 | LuPra_05559 | LamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate. | Ferredoxin-dependent glutamate synthase 1. | 0.800 |
| LuPra_00721 | kdgR_1 | LuPra_00721 | LuPra_04676 | LamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate. | Pectin degradation repressor protein KdgR. | 0.417 |
| LuPra_00721 | kdgR_2 | LuPra_00721 | LuPra_05018 | LamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate. | Transcriptional regulator KdgR. | 0.417 |
| LuPra_00721 | kipA | LuPra_00721 | LuPra_04203 | LamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate. | KipI antagonist. | 0.985 |
| LuPra_00721 | kipI | LuPra_00721 | LuPra_04204 | LamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate. | Sporulation inhibitor KipI. | 0.999 |
| LuPra_00721 | ywrD_1 | LuPra_00721 | LuPra_00355 | LamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate. | Gamma-glutamyltransferase YwrD. | 0.900 |
| LuPra_00721 | ywrD_2 | LuPra_00721 | LuPra_00480 | LamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate. | Gamma-glutamyltransferase YwrD. | 0.900 |
page 1 of 35